Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_N24
(898 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 3e-34
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35) 74 1e-13
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 29 6.7
SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 142 bits (345), Expect = 3e-34
Identities = 77/207 (37%), Positives = 112/207 (54%), Gaps = 1/207 (0%)
Frame = +3
Query: 201 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 380
+V+IA AVRTP+ V A+ RA I ++ EV +G V +A G
Sbjct: 9 DVIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEVILGQVLTAGQG 68
Query: 381 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 560
Q PARQA I AG+P VN +C SG+K++ L Q + G +I++AGG ESMS P
Sbjct: 69 QGPARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDSNIVVAGGQESMSQAP 128
Query: 561 FYL-KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAQKLQITRXDQDXYAVHSY 737
R +G M L+D ++ DGL D +N +HMG AEN A++ +++R +QD +A+ S
Sbjct: 129 HCCHMRPALKFGDMTLIDTMLKDGLMDSFNNYHMGITAENVAKQWEVSREEQDNFALTSQ 188
Query: 738 XRSXXXXXXXXFVDELVPVPVPXKEGL 818
R+ F DE+V V + + GL
Sbjct: 189 QRTETAQKAGYFSDEIVTVSIKTRAGL 215
>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
Length = 415
Score = 74.1 bits (174), Expect = 1e-13
Identities = 36/70 (51%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +3
Query: 660 GNCAENTAQKLQITRXDQDXYAVHSYXRSXXXXXXXXFVDELVPVPVPXKEGLL-LIFAE 836
G CAEN A K ITR +QD YA+HSY R+ F E+VPV +P K+G ++F E
Sbjct: 59 GVCAENAASKYNITREEQDDYAIHSYRRTAAAWDAGKFKQEVVPVNIPQKKGKPDIVFEE 118
Query: 837 DEEYKXVXFE 866
DEEYK V FE
Sbjct: 119 DEEYKKVSFE 128
Score = 62.9 bits (146), Expect = 3e-10
Identities = 35/60 (58%), Positives = 40/60 (66%), Gaps = 11/60 (18%)
Frame = +3
Query: 375 LGQAPARQAVIFAG-----------LPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDI 521
+GQAPARQA + AG LP ST CTT+NKVCASGMKSIM AAQ L G+Q +
Sbjct: 1 MGQAPARQAALGAGTRXVTSIRDQALPISTPCTTINKVCASGMKSIMAAAQSLMCGSQGV 60
>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 51.2 bits (117), Expect = 1e-06
Identities = 30/74 (40%), Positives = 40/74 (54%)
Frame = +3
Query: 594 GMQLVDGIVFDGLTDVYNKFHMGNCAENTAQKLQITRXDQDXYAVHSYXRSXXXXXXXXF 773
G Q+ D + + GLTD+ MG AEN A+K ITR + D +A+ S R F
Sbjct: 799 GAQMEDTL-WQGLTDMLPGLPMGITAENLAEKYNITREECDQFALLSQQRWAAAHESGAF 857
Query: 774 VDELVPVPVPXKEG 815
E+VPVPV K+G
Sbjct: 858 TAEIVPVPVKGKKG 871
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -1
Query: 337 ISSLGIPALSIAALTATAPNSDADKLDKLPRKEPIGVLTADAITTSLRETLVENAAIAVN 158
I+S +P + L AT S L+K +E + A A+ T + TLVE + VN
Sbjct: 972 ITSTSVPEQNATVLPATTFQS----LNKTTTEESVVEPNATAVPTRVNATLVETTGMPVN 1027
Query: 157 I 155
+
Sbjct: 1028 V 1028
>SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 353 WQCLFCKFGPSTCKTSCNICRFAKKY-HMYNCK-QSMCLWHEIYNVGSTR 496
W+C K PS ++ + F KKY H + +S LW+ Y + + R
Sbjct: 80 WECEHVKPVPSDVRSKMRLSGFYKKYLHAFGIPVRSNTLWYRTYAMSTDR 129
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 353 WQCLFCKFGPSTCKTSCNICRFAKKYHMYNCKQSMCL 463
WQ + + GP KTSC +C KY++ N CL
Sbjct: 864 WQSNYTQCGPCASKTSCPVCNI--KYNL-NDLMIQCL 897
>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 28.3 bits (60), Expect = 8.9
Identities = 27/102 (26%), Positives = 41/102 (40%)
Frame = +3
Query: 306 IERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIML 485
I + GI EEI +V A + + + G PKS +CT+VN+V G+ +
Sbjct: 72 IVKVGITTEEIDY----HVHKAIIEHGAYPSPLNYRGFPKS-VCTSVNEVAVHGIPNSRC 126
Query: 486 AAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYGGMQLVD 611
G + GG+ F + G G +LVD
Sbjct: 127 LQNGDLLSVDISLFYGGVHGDLCETFLV--GNVDESGRRLVD 166
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,358,120
Number of Sequences: 59808
Number of extensions: 482857
Number of successful extensions: 1316
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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