Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N21
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   100   1e-21
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26...    29   3.8  
02_02_0146 - 7171656-7172044,7172383-7175008                           29   6.6  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  100 bits (240), Expect = 1e-21
 Identities = 42/83 (50%), Positives = 60/83 (72%)
 Frame = +3

Query: 228 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRXRNGVTPSHFCRSSGSIARKALQSLEALK 407
           W+Y R A+I R IY+R  +GV    KI+GGR RNG  P HFC+SSG+I+R  LQ L+ + 
Sbjct: 55  WYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMG 114

Query: 408 LVEKVQDGGRILTTQGRRDLDRI 476
           +++    GGR++T+QGRRDLD++
Sbjct: 115 IIDVDPKGGRLITSQGRRDLDQV 137



 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 28/46 (60%), Positives = 37/46 (80%)
 Frame = +2

Query: 86  TVKXVEQXKXVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 223
           TVK V   + VK  +AHLK++GK+++PE +D+VKTARFKEL PYDP
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDP 53


>08_01_0036 -
           267236-268165,268255-268299,268485-268574,269485-269805,
           269895-270098,271532-271664,271810-271881,273106-273168,
           273252-275034,275169-275217
          Length = 1229

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +1

Query: 220 PXIGSMCVVLPSFVIFTFAHLLESRLSPRSLVGANVMELHLHISAGHQAVL 372
           P +G++ + LP F+       +   LSPR L+ A V EL L    GH A L
Sbjct: 160 PELGNLVLALPGFLSLVAVRSIPQELSPR-LLWAPVFEL-LADHRGHPAFL 208


>02_02_0146 - 7171656-7172044,7172383-7175008
          Length = 1004

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 191 ARFKELAPYDPXLVLCALCCHPSSYLHSLTC-WSQDCHQD 307
           A  + LA  D  L   +LCC   S +H  TC WSQ    D
Sbjct: 586 AALQTLAYEDSFLDNPSLCCQSESGMHIRTCPWSQSMSHD 625


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,597,350
Number of Sequences: 37544
Number of extensions: 269058
Number of successful extensions: 662
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)