Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N21
         (898 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          65   6e-11
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)                32   0.55 
SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.9  
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        29   6.7  
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.7  
SB_31611| Best HMM Match : Peptidase_M16_C (HMM E-Value=0.0021)        28   8.9  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 31/57 (54%), Positives = 38/57 (66%)
 Frame = +3

Query: 306 IFGGRXRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 476
           I  GR   G  PSHF   S S+AR  L+ LE +KLVEK   GGR +T+QG+RD+DRI
Sbjct: 32  IRAGRKNRGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 17/26 (65%), Positives = 23/26 (88%)
 Frame = +2

Query: 146 TGKVKVPEHMDLVKTARFKELAPYDP 223
           +G +K+P+ +DLVKT +FKELAPYDP
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDP 27


>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
          Length = 689

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 19/78 (24%), Positives = 30/78 (38%)
 Frame = +2

Query: 152 KVKVPEHMDLVKTARFKELAPYDPXLVLCALCCHPSSYLHSLTCWSQDCHQDLWWAXT*W 331
           K++ P H  L +      +A +    + C +CC     L  L C  Q CH    W    W
Sbjct: 161 KIRTPAHT-LSQVTMTNNMADH----MTCIICCEGDDELELLPCCKQPCHYPCLWK---W 212

Query: 332 SYTFTFLQVIRQYCTQGF 385
            +     +    +C +GF
Sbjct: 213 VHAHLTPRSTCPHCRKGF 230


>SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 233 LCALCCHPSSYLHSLTCWSQDCHQ 304
           LC+  C   S+ H+LTC ++ CHQ
Sbjct: 99  LCSQSCVWESHCHALTCTARICHQ 122


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 344 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 436
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 21  TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51


>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 344 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 436
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 286 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316


>SB_31611| Best HMM Match : Peptidase_M16_C (HMM E-Value=0.0021)
          Length = 398

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +2

Query: 119 KTVAAHLKKT--GKVKVPEHMDLVKTARFKELAP-YDPXLVLCALCCHPS 259
           K+V++ L +    KV      DL +  + + LAP +DP    CA+CC+PS
Sbjct: 268 KSVSSWLARDLLNKVSQVTMSDLERVGQ-RYLAPLFDPVTSWCAVCCNPS 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,104,352
Number of Sequences: 59808
Number of extensions: 322017
Number of successful extensions: 659
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)