Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_N21
(898 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 96 3e-20
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 95 4e-20
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 93 3e-19
At4g16095.1 68417.m02440 disease resistance protein-related cont... 29 3.2
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 29 5.5
At3g54950.1 68416.m06092 patatin-related low similarity to patat... 28 7.3
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 95.9 bits (228), Expect = 3e-20
Identities = 41/83 (49%), Positives = 57/83 (68%)
Frame = +3
Query: 228 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRXRNGVTPSHFCRSSGSIARKALQSLEALK 407
W+Y+R A++ R IY+R +GV +I+GG RNG P HFC+SSG IAR LQ LE +
Sbjct: 53 WYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMS 112
Query: 408 LVEKVQDGGRILTTQGRRDLDRI 476
+VE GGR +T+ G+RDLD++
Sbjct: 113 IVELDTKGGRRITSSGQRDLDQV 135
Score = 58.4 bits (135), Expect = 6e-09
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = +2
Query: 86 TVKXVEQXKXVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 223
TVK V VK A+HLK++GK+++P D+VKT R KELAPYDP
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDP 51
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 95.5 bits (227), Expect = 4e-20
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = +3
Query: 228 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRXRNGVTPSHFCRSSGSIARKALQSLEALK 407
W+Y+R A++ R +Y+R +GV +I+GG RNG P HFC+SSG IAR LQ LE +
Sbjct: 53 WYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMN 112
Query: 408 LVEKVQDGGRILTTQGRRDLDRI 476
+VE GGR +T+ G+RDLD++
Sbjct: 113 IVELDTKGGRRITSSGQRDLDQV 135
Score = 58.0 bits (134), Expect = 8e-09
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +2
Query: 86 TVKXVEQXKXVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 223
TVK V VK A+HLK++GK+++P D+VKT + KELAPYDP
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDP 51
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 92.7 bits (220), Expect = 3e-19
Identities = 37/83 (44%), Positives = 57/83 (68%)
Frame = +3
Query: 228 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRXRNGVTPSHFCRSSGSIARKALQSLEALK 407
W+Y+R A++ R +Y+R +GV +I+GG RNG P HFC+SSG +AR LQ L+ +
Sbjct: 53 WYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMN 112
Query: 408 LVEKVQDGGRILTTQGRRDLDRI 476
+V+ GGR +T+ G+RDLD++
Sbjct: 113 IVDLDTKGGRKITSSGQRDLDQV 135
Score = 59.3 bits (137), Expect = 3e-09
Identities = 26/46 (56%), Positives = 34/46 (73%)
Frame = +2
Query: 86 TVKXVEQXKXVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 223
TVK V + VK AAHLK++GK+++P D+VKT + KELAPYDP
Sbjct: 6 TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDP 51
>At4g16095.1 68417.m02440 disease resistance protein-related
contains weak similarity to rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631
Length = 187
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 432 HRPELSQQASMPPTIAKPCVQYCLM 358
H P L Q PP + C++YC M
Sbjct: 86 HMPRLPDQHRFPPNLTNICLRYCCM 110
>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
Domain of unknown function (DUF383) and PF04064: Domain
of unknown function (DUF384)
Length = 339
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 348 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRI 476
FCRSSG A + + ++ + + K +DG ++L RR L +I
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186
>At3g54950.1 68416.m06092 patatin-related low similarity to patatin
[GI:169500][Solanum tuberosum]; contains Patatin domain
PF01734
Length = 488
Score = 28.3 bits (60), Expect = 7.3
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -2
Query: 267 KYDEGWQHNAHRTNXGSYG-ASSLKRAVFTRS-MCSGTLTLPVFFK*AATVLTXLXCSTX 94
K D+ WQ R G YG A LKR + T S CSGT L K + + LT
Sbjct: 167 KADDTWQFLT-RNAKGLYGGAGILKRVLRTGSGCCSGTAKLKKVMKESFSELTLKD---- 221
Query: 93 FTVTERILPCVD 58
T+ ++PC D
Sbjct: 222 -TLKPVLIPCYD 232
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,362,204
Number of Sequences: 28952
Number of extensions: 211333
Number of successful extensions: 441
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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