Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_N18
(892 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 136 3e-33
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 128 8e-31
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc... 103 3e-23
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 91 2e-19
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 91 3e-19
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 79 8e-16
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 60 3e-10
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 39 0.001
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 36 0.008
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po... 31 0.17
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 29 0.89
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 28 1.6
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 28 1.6
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 28 2.1
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 27 2.7
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 3.6
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo... 27 3.6
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 3.6
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po... 26 6.3
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ... 26 8.3
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 8.3
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 8.3
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 136 bits (330), Expect = 3e-33
Identities = 79/215 (36%), Positives = 121/215 (56%), Gaps = 10/215 (4%)
Frame = +2
Query: 137 LSSGGNIPVVALGTWLGHRPKGKVVQVTNDTEQAVIYALEAGYTHIDTAYKYGIEDQVGR 316
L +G IP + LGTW GK ++T+ AV AL+AGY HIDTA+ YG E ++G
Sbjct: 17 LPNGDKIPSIGLGTWRS----GK-----DETKNAVCAALKAGYRHIDTAHIYGNEKEIGE 67
Query: 317 ALTKKFSEGLKRESIFITTKLWNSYHEREQVIPALRKSLENLNLEYVDLYLIHWPIAMF- 493
+ + G+ R I++T+KLW + H V AL K+L++LNLEY+D YLIHWP A+
Sbjct: 68 GIRES---GVPRTDIWVTSKLWCNAHRAGLVPLALEKTLQDLNLEYIDAYLIHWPFALLS 124
Query: 494 ---------ENDTLLDNVDFLDTWRGMIDAKKLGLTKSIGISNFNQEQIQRIIDSGLEXP 646
+ + + ++V +TW+ M + + G + IGISNFN E + R++ P
Sbjct: 125 GPEELPRNEKGELIYEDVPIEETWQAMEELLETGKVRYIGISNFNNEYLDRVLKIAKVKP 184
Query: 647 SALQIELNLNLQQPELFKFCRENDIVVMAYTPFGS 751
+ Q+EL+ L Q E + ++ I V AY+P +
Sbjct: 185 TIHQMELHPYLPQTEYLEKHKKLQIHVSAYSPLAN 219
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 128 bits (310), Expect = 8e-31
Identities = 78/215 (36%), Positives = 116/215 (53%), Gaps = 10/215 (4%)
Frame = +2
Query: 137 LSSGGNIPVVALGTWLGHRPKGKVVQVTNDTEQAVIYALEAGYTHIDTAYKYGIEDQVGR 316
L+ G IP + LGTW N T+ AV AL+ GY HID A YG ED+VG
Sbjct: 18 LADGSKIPGLGLGTWRSE---------PNQTKNAVKTALQYGYRHIDAAAIYGNEDEVGD 68
Query: 317 ALTKKFSEGLKRESIFITTKLWNSYHEREQVIPALRKSLENLNLEYVDLYLIHWPIAM-- 490
+ + G+ R+ I++T+KLW + H E V AL K+L++L L+Y+D YLIHWP++
Sbjct: 69 GIKES---GVPRKDIWVTSKLWCNAHAPEAVPKALEKTLKDLKLDYLDEYLIHWPVSFKT 125
Query: 491 ----FEND----TLLDNVDFLDTWRGMIDAKKLGLTKSIGISNFNQEQIQRIIDSGLEXP 646
F D + + +TW+ M + G + IG+SNFN ++RI+ P
Sbjct: 126 GEDKFPKDKDGNLIYEKNPIEETWKAMEKLLETGKVRHIGLSNFNDTNLERILKVAKVKP 185
Query: 647 SALQIELNLNLQQPELFKFCRENDIVVMAYTPFGS 751
+ Q+EL+ L Q E + ++ I V AY+PFG+
Sbjct: 186 AVHQMELHPFLPQTEFVEKHKKLGIHVTAYSPFGN 220
>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
reductase AKR3C2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 284
Score = 103 bits (247), Expect = 3e-23
Identities = 67/211 (31%), Positives = 105/211 (49%), Gaps = 2/211 (0%)
Frame = +2
Query: 155 IPVVALGTWLGHRPKGKVVQVTNDTEQAVIYALEAGYTHIDTAYKYGIEDQVGRALTKKF 334
+P +GT L + KG++ + D+ V AL AG+ HID A YG E++VG AL +
Sbjct: 12 VPAYGVGTALFKKEKGEINRTIVDS---VKNALAAGFIHIDCAEVYGNEEEVGVALKEA- 67
Query: 335 SEGLKRESIFITTKLWNSYHEREQVIPALRKSLENLNLEYVDLYLIHWPIAMFENDTLLD 514
+ R +FIT+K+ H + + AL +SL L +Y+DLYL+H PI +E
Sbjct: 68 --NVPRSKLFITSKVM---HNVDNIPEALNESLRKLGTDYLDLYLLHSPIPFYEK----- 117
Query: 515 NVDFLDTWRGMIDAKKLGLTKSIGISNFNQEQIQRIIDSGLEXPSALQIELNLNLQQ--P 688
+ + W+ M A GL S+G+SNF ++ ++ + P QIE + + +
Sbjct: 118 KIPISEGWKAMETALGTGLVHSVGVSNFRIPDLEELLKTSTITPRVNQIEFHPQVYKAAK 177
Query: 689 ELFKFCRENDIVVMAYTPFGSLFPSKAQPDA 781
L +FC+ I+V Y P L P A
Sbjct: 178 PLVEFCQSKGIIVEGYGPLSPLVRDAQGPVA 208
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 91.1 bits (216), Expect = 2e-19
Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 4/216 (1%)
Frame = +2
Query: 131 LQLSSGGNIPVVALGTWLGHRPKGKVVQVTNDTEQAVIYALEAGYTHIDTAYKYGIEDQV 310
++L++G P A G+++ +R K +V AL+ GY HID+A Y E
Sbjct: 6 VKLNNGLKCPQFAYGSYMVNRTK---------CFDSVYAALQCGYRHIDSAQMYHNEADC 56
Query: 311 GRALTKKFSE-GLKRESIFITTKLWNSYHEREQVIPALRKSLENLNLEYVDLYLIHWPIA 487
GRA+ K E G KRE I+ T+KL N + + ++ S++ L Y+DL+L+H P
Sbjct: 57 GRAILKFMEETGTKREDIWFTSKL-NDLSGYKSTLSSIDASVKACGLGYIDLFLLHSPYG 115
Query: 488 MFENDTLLDNVDFLDTWRGMIDAKKLGLTKSIGISNFNQEQIQRIIDSGLE-XPSALQIE 664
D +++W+ + + G ++IG+SNF IQ ++DS + P QIE
Sbjct: 116 -----------DRIESWKALEKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCVNQIE 164
Query: 665 LNLNLQQPELFKFCRENDIVVMAYTPF--GSLFPSK 766
L+ Q ++ +C I + AY P G F +K
Sbjct: 165 LHPFCSQQKVVDYCESKGIQLAAYAPLVHGEKFGNK 200
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 90.6 bits (215), Expect = 3e-19
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
Frame = +2
Query: 221 NDTEQAVIYALEAGYTHIDTAYKYGIEDQVGRALTKKFSE-GLKRESIFITTKLWNSYHE 397
N+ V AL++GY HIDTA YG ED G+A+ + +KR IF+T+KL N +
Sbjct: 32 NECYGLVTQALDSGYRHIDTAAVYGNEDICGKAIVDWCEKNNVKRTDIFLTSKLANC-SD 90
Query: 398 REQVIPALRKSLENLNLEYVDLYLIHWPIAMFENDTLLDNVDFLDTWRGMIDAKKLGLTK 577
A+R SL +L Y+DL+LI P + +W+ M + G +
Sbjct: 91 YYSTRAAIRSSLHHLG-TYIDLFLIQSPAG--------GKKSRIASWKAMEEFVDSGDIR 141
Query: 578 SIGISNFNQEQIQRIIDSGLE-XPSALQIELNLNLQQPELFKFCRENDIVVMAYTP 742
S+G+SN+ + +Q + S + P QIEL+ L Q ++ K+C+ +DI + AY+P
Sbjct: 142 SVGVSNYGVKHLQELYASNPKFYPCVNQIELHPFLSQDDIVKYCQSHDIAIEAYSP 197
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 79.0 bits (186), Expect = 8e-16
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 5/178 (2%)
Frame = +2
Query: 224 DTEQAVIYALEAGYTHIDTAYKYGIEDQVGRALTKKFSEG--LKRESIFITTKLWNSYHE 397
D Q VI AL G ID+A Y E + +A+ + +KRE I + TK+ +S
Sbjct: 25 DCYQQVIEALSLGIRVIDSAITYRNEKECEQAIQDFCHQNVNIKREDITLITKIPDSLQG 84
Query: 398 REQVIPALRKSLENLNLEYVDLYLIH---WPIAMFENDTLLDNVDFLDTWRGMIDAKKLG 568
E+ A+ +SL +D+ LIH WP+ E+ WR ++ +K G
Sbjct: 85 FERTWKAVEQSLRRTGRPKLDVVLIHSPKWPVRRIES------------WRALLQHQKEG 132
Query: 569 LTKSIGISNFNQEQIQRIIDSGLEXPSALQIELNLNLQQPELFKFCRENDIVVMAYTP 742
IG+SN+N ++ II GL P+ Q+E + +P +C + I+V A++P
Sbjct: 133 RINKIGVSNYNIHHLEEIISLGLPLPAINQVEFSAFNNRPTFLSYCFNHGILVQAFSP 190
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 60.5 bits (140), Expect = 3e-10
Identities = 61/231 (26%), Positives = 113/231 (48%), Gaps = 19/231 (8%)
Frame = +2
Query: 122 VPTLQLSSGGNIPVVALGTWLGHRPKGKVVQVTNDTEQAVI-YALEAGYTHIDTAYKYGI 298
+PT ++ + +P + G H G + N QAV+ +A + G T D++ YG
Sbjct: 3 IPTRKIGND-TVPAIGFGCMGLHAMYGPSSEEAN---QAVLTHAADLGCTFWDSSDMYGF 58
Query: 299 ---EDQVGRALTKKFSEGLKRESIFITTKLW----------NSYHEREQVIPALRKSLEN 439
E+ +GR F + +R+ IF+ TK + +E + + AL SL+
Sbjct: 59 GANEECIGRW----FKQTGRRKEIFLATKFGYEKNPETGELSLNNEPDYIEKALDLSLKR 114
Query: 440 LNLEYVDLYLIHWPIAMFENDTLLDNVDFLDTWRGMIDAKKLGLTKSIGISNFNQEQIQR 619
L ++ +DLY +H F +T ++ + + + ++A K+ + IG+S + I+R
Sbjct: 115 LGIDCIDLYYVH----RFSGETPIEKI--MGALKKCVEAGKI---RYIGLSECSANTIRR 165
Query: 620 IIDSGLEXPSALQIE---LNLNLQQPEL--FKFCRENDIVVMAYTPFGSLF 757
+ + SA+Q+E +L +++PE+ K CREN+I ++ Y P G F
Sbjct: 166 A--AAVYPVSAVQVEYSPFSLEIERPEIGVMKACRENNITIVCYAPLGRGF 214
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 38.7 bits (86), Expect = 0.001
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Frame = +2
Query: 143 SGGNIPVVALGTWLGHRPKGKVVQVTNDTEQAVIYALEAGYTHIDTA--YKYGIEDQV-G 313
SG + +LG WL + +G V+ T+ + A + G DTA Y G + V G
Sbjct: 21 SGLKVSAFSLGGWLTYGNEGYDVE---HTKNCLKQAWDLGINTFDTAEIYSNGNSETVMG 77
Query: 314 RALTK---KFSEGLKRESIFIT--TKLWNSYH-EREQVIPALRKSLENLNLEYVDLYLIH 475
+A+ + SE + +F TKL N+ R+ +I L SL+ L L YVD+ + H
Sbjct: 78 KAIKELGWDRSEYVITTKVFFGAGTKLPNTTGLSRKHIIEGLNASLKRLGLPYVDVIMAH 137
Query: 476 WP 481
P
Sbjct: 138 RP 139
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 35.9 bits (79), Expect = 0.008
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 524 FLDTWRGMIDAKKLGLTKSIGISNFNQEQIQRIIDSGLEXPSALQIELNLNLQQP-ELFK 700
++DTW+ + + G ++G+S F ++QR+I S P + QI + N + P +L
Sbjct: 158 WVDTWKLLEEKVGEGKIGTLGVSEFGVNELQRLISSVNVVPESTQINIGQNCKLPNDLLN 217
Query: 701 F 703
F
Sbjct: 218 F 218
>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 31.5 bits (68), Expect = 0.17
Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +2
Query: 527 LDTWRGMIDAKKLGLTKSIGISNFNQEQIQRIIDSGLEXPSALQIELNL---NLQQPELF 697
+ T +G +D+ K+ +G+S + E I+R + +A+++E +L +++ +
Sbjct: 135 MKTLKGFVDSGKISC---VGLSEVSAETIKRA--HAVVPIAAVEVEYSLFSRDIETNGIM 189
Query: 698 KFCRENDIVVMAYTPF 745
CR+ I ++AY+PF
Sbjct: 190 DICRKLSIPIIAYSPF 205
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 749 SLFPSKAQPDAPRRGLTMNVSSVS 820
SLF S + PD RR T N+SSVS
Sbjct: 128 SLFSSGSPPDTTRRNSTSNLSSVS 151
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 28.3 bits (60), Expect = 1.6
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 320 LTKKFSEGLKRESIFITTKLWNSYHEREQVIPALRKSLENLNLEYVDLYLIHWPIAM-FE 496
L KK+ LKR+ + K WN H ++V P L + L E + L+ I +
Sbjct: 335 LKKKYVLQLKRDELENVYKAWNIKHP-QRVNPKLLRWTPYLGEEQISNLLLKENILIPLP 393
Query: 497 NDTLLDNVDFLDT 535
LLDN LD+
Sbjct: 394 QKRLLDNSHHLDS 406
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 524 FLDTWRGMIDAKKLGLTKSIGISNFNQEQIQRIIDSGLEXPSALQIEL 667
F+ T+ G + ++ G + Q+Q+QR++ S E P A Q+ L
Sbjct: 364 FIQTYLGPSNNRRRGRRSENPMQKL-QQQLQRLVSSAKERPKATQLSL 410
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 320 LTKKFSEGLKRESIFITTKLWNSYHEREQVIPALRKSLENLNLEYVDLYLIH 475
L +K + LK+ IF T L ++ ++P + K + NLN + D Y IH
Sbjct: 77 LCRKLASTLKQRVIFFTRVLL-TFFCWTVLLPLIFKHVWNLNFKIGDTYTIH 127
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 576 LVRPSFLASIIPRHVSRKSTLSSKVSFSNI 487
L+ PSF A I RHV + T S+ V N+
Sbjct: 698 LIEPSFTAKIFARHVLLEKTKSTLVVKKNV 727
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 27.1 bits (57), Expect = 3.6
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Frame = +2
Query: 398 REQVIPALRKSLENLNLEYVDLYLIHWPIAMFENDTLLDNVDFLDTWRG-MIDAKKLG-L 571
R ++ R+ +NL+ VD + A+ N + + ++T R +A KL +
Sbjct: 115 RVDILEVARQFEMRINLDIVDSMIAS---AIENNKVATEILPPVETLRSRQFEASKLREI 171
Query: 572 TKSIGISNFNQEQIQRIIDSGLEXPSALQIELNLNLQQPELFKFCRE 712
K+I + QE+I+ I S L+ + L + N + F++C +
Sbjct: 172 RKNIDSGFYTQEEIEVIARSMLDDVAELSSDYLGNTVVQKFFEYCSD 218
>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 221 NDTEQAVIYALEAGYTHIDTAYKYGIEDQVGRALTKKFSEGL 346
N+ E +Y + A H+ AY+ I Q+G +T+ E +
Sbjct: 244 NEKEAYRLYKMAADLNHVQAAYRVAICLQMGFGVTQNTEEAI 285
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 392 HEREQVIPALRKSLENLNLEYVDLYLIHWP--IAMFENDTLLDNVDFLDT 535
H+++++I + + N NLE+V L +H I + ++L +N +++ +
Sbjct: 482 HKKQRLIKQITNIMHNFNLEFVTLSYLHSKGIITTSQLESLRNNTEWISS 531
>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 221 NDTEQAVIYA---LEAGYTHIDTAYKYGIEDQVG 313
NDT A+ A LEAG THIDT+ GI ++ G
Sbjct: 227 NDTGMAIANAYCALEAGATHIDTSI-LGIGERNG 259
>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 218 TNDTEQAVIYALEAGYTHIDTAYKYGIEDQVGRALTKKFSEGLKRE 355
T +T VIY+ + A K GIE G+A+ +F E L E
Sbjct: 3 TANTVAIVIYSTYGHVVKLAEAEKAGIEKAGGKAVIYQFPETLSPE 48
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 680 QQP-ELFKFCRENDIVVMAYTPFGSLFPSKAQPDAPRRGLTMNVSSVSPXNTTNCPP 847
Q+P ELF F + IV+ AY +FP + + +T ++ N C P
Sbjct: 232 QKPEELFIFTTKFSIVLCAYMGNSQIFPLVSSKNCFEEPITPRFQALHRINMIECIP 288
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/64 (26%), Positives = 24/64 (37%)
Frame = +1
Query: 613 PEDHRQRTGXTFGFTDRVKPQPATTRALQVLPRKRHSGDGVHSLRVAVPEQGSTRRSSXR 792
PE + R+G FGF+ T ++VLP K+ + PE S
Sbjct: 179 PEKYSTRSGFGFGFSTGTNESEITPN-IKVLPPKKKKNASWGKMLNEDPEYDSAEEDYLS 237
Query: 793 IDDE 804
D E
Sbjct: 238 TDSE 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,669,121
Number of Sequences: 5004
Number of extensions: 80914
Number of successful extensions: 282
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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