Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N17
         (920 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0256 - 2083973-2084816,2084922-2086093                           30   2.3  
11_04_0009 - 12132781-12133272                                         28   9.1  

>01_01_0256 - 2083973-2084816,2084922-2086093
          Length = 671

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 788 VXGGGXGXXFPXXNESAXPRGKGGXXXXAPXP 883
           V GGG G  +P   ES+ PR +GG     P P
Sbjct: 11  VGGGGAGAGYPESTESS-PRSRGGDSWDEPFP 41


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 227 RSSTWAREQRWSCSKPAPERRRRIGSLR 144
           R   W RE+R S  +  P +RRR+G  R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,206,127
Number of Sequences: 37544
Number of extensions: 286071
Number of successful extensions: 536
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)