Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N14
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    68   2e-12
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    67   4e-12

>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 34/65 (52%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
 Frame = +1

Query: 112 MPRXIKXXKXFLIKAXXXXAKSVKIKXXP-EXVKFKVRCSRFLYTLVITDKEKAEXLKQS 288
           MPR +   K FL  A    A S ++K    + VKFK+RCSR+LYTLV+ D +KAE L+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 289 LPPGL 303
           LPP L
Sbjct: 61  LPPAL 65


>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 35/65 (53%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
 Frame = +1

Query: 112 MPRXIKXXKXFLIKAXXXXAKSVKIKXXP-EXVKFKVRCSRFLYTLVITDKEKAEXLKQS 288
           MPR I   K FL  A    A S +IK    + VKFK+RCS++LYTLV+ D +KAE L+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 289 LPPGL 303
           LPP L
Sbjct: 61  LPPDL 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,002,827
Number of Sequences: 5004
Number of extensions: 22062
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)