Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N12
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    29   0.68 
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    29   1.2  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   3.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   4.8  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   6.3  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   8.4  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.4  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   8.4  

>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +3

Query: 297 TCEMEGATFFYPDDKFEFDAVTTYWNTSQPFEWISIGISSQMAKG--VFETVDGVSIMDV 470
           TC  EG    +        AV ++   S PF  I++   +Q A G  +  ++  V + DV
Sbjct: 72  TCGSEGEIHLWDIRSQAKSAVRSWTQQSTPFTCIALNKKNQFATGSELTRSLASVQLWDV 131

Query: 471 YNKWK-PGEPNDSHNNE 518
            ++ K   + ND+HN++
Sbjct: 132 RSEQKLIRQWNDAHNDD 148


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 648 DYAYSDVLGRCYKMYLTPY 704
           D+  S+++GRC+ MY+T Y
Sbjct: 420 DHPVSEIVGRCFVMYITRY 438


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 586 LYARKHWLRSSGM*IVTFLTPTTHTAMYLADATRCI*P 699
           +YA   WL  SG+ + + L     +A+Y AD  +C+ P
Sbjct: 873 IYANAQWLSYSGLSLESSLGLGFLSAVYHADRKKCLLP 910


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -2

Query: 220  SLRKNLFSRCP*MSSEGNKVRRNNMGNLRLFILNLKIRSIFILYTDTSKHDRASRQESN- 44
            +L  N+ S C     +G K   +++ NLR  I N  I+    + TD + +   S +E+N 
Sbjct: 1128 ALLTNVLSNCY-QFEDGIKNVVDSINNLRTSIANGDIKEPLDVVTDDNTNSNFSLEETNA 1186

Query: 43   -LKEFPSSE 20
             + + P SE
Sbjct: 1187 SVTDMPESE 1195


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
            Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +3

Query: 207  FFRKDYTYIESTESFYKIHTLYKKW-VDAKKTCEMEGATFFYPDDKFEFDAVTTYWNTSQ 383
            F   D   +   E   +I T +K W +  K+      + FF P+D  E +     +    
Sbjct: 840  FSDDDLKLMNEEEIMEQIET-FKAWSMKFKEKSSGNPSYFFSPEDTEEKELWNNLFEDWY 898

Query: 384  PFEWISIGISSQMAKGVFETVDGVS 458
            P      G  S + KG+ ET D +S
Sbjct: 899  PNRARDPGTLSHLVKGLKETADHLS 923


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 198 ENKFFRKDYTYIESTESFYKIHTLYKKWVDAK 293
           E     KDYT  E  + F K   +YKK  D K
Sbjct: 5   EESEINKDYTVQEDLDEFAKYTCVYKKRHDEK 36


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = -2

Query: 691 YIL*HRPSTSLYA*SVLGMSQFTFHSSEASV----FLHINGKDFAQSSSFISPSFL 536
           +IL  + STS+Y  S+ G+S ++ H    S      LH       +    IS +FL
Sbjct: 274 HILMSKDSTSIYTISLEGLSIYSLHDESKSYMLIKILHFQSISKIEHIELISDNFL 329


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 244 RAFTKFTRYIRNGWTLRRL-AKWRGLLSFTLMTSLNSML*PLIGTRHNPSN 393
           +A+TK   +IRNG +     ++W+GL + TL  S  S +       H PSN
Sbjct: 435 KAWTK--HFIRNGESAAYAWSQWKGLYNLTLNMSYISFVMAAWKLYHLPSN 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,538,244
Number of Sequences: 5004
Number of extensions: 73785
Number of successful extensions: 199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)