Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N12
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561...    30   2.9  
04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834     29   5.0  

>01_06_0902 +
           32853708-32853739,32854787-32855596,32856094-32856157,
           32856375-32856446
          Length = 325

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = -1

Query: 656 CVVGVRNVTIHIPLE-RSQCFLAYKWERFRTVIIVHKSVISMDDDAIFVVMR 504
           C VGV+++T+      RS    +   E F+ + +V+ + ISMDDD +F++ R
Sbjct: 183 CEVGVKDITLGASNPCRSNLSFSEIVEMFKELPMVNPT-ISMDDDVVFLLSR 233


>04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834
          Length = 253

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 546 GLMNDDDCAKSFPFICKKTLASLEWNVNCDIPNTDYAYSDVLGRCYKMYLTP 701
           G  + D+C +   + C  T  ++  +  C  P      + + G C K +LTP
Sbjct: 194 GCQDIDECEEHENYHCYGTCKNILGSFECSCPAGTRGNASIEGACQKNFLTP 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,212,602
Number of Sequences: 37544
Number of extensions: 450673
Number of successful extensions: 1035
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)