Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_N11
(933 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL357713-1|CAH73433.1| 1566|Homo sapiens arginine-glutamic acid ... 31 6.0
AL356072-3|CAH70517.1| 1298|Homo sapiens arginine-glutamic acid ... 31 6.0
AL356072-2|CAH70516.1| 1566|Homo sapiens arginine-glutamic acid ... 31 6.0
AL096855-2|CAI19209.1| 1298|Homo sapiens arginine-glutamic acid ... 31 6.0
AL096855-1|CAI19208.1| 1566|Homo sapiens arginine-glutamic acid ... 31 6.0
AF041104-1|AAC28264.1| 1012|Homo sapiens atrophin-1 like protein... 31 6.0
AF016005-1|AAC31120.1| 1012|Homo sapiens atrophin-1 related prot... 31 6.0
AB036737-1|BAA95898.1| 1566|Homo sapiens RERE protein. 31 6.0
AB007927-1|BAA32303.3| 1552|Homo sapiens KIAA0458 protein protein. 31 6.0
>AL357713-1|CAH73433.1| 1566|Homo sapiens arginine-glutamic acid
dipeptide (RE) repeats protein.
Length = 1566
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +1
Query: 577 PPXGQKPXKGRVAGFXP*G-PPPLNXHXKNQPXXQRXRXPXGL*KXQXFPPXNLPRAPS 750
PP KP P PPPL ++QP P GL + Q PP P+
Sbjct: 965 PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPT 1023
>AL356072-3|CAH70517.1| 1298|Homo sapiens arginine-glutamic acid
dipeptide (RE) repeats protein.
Length = 1298
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +1
Query: 577 PPXGQKPXKGRVAGFXP*G-PPPLNXHXKNQPXXQRXRXPXGL*KXQXFPPXNLPRAPS 750
PP KP P PPPL ++QP P GL + Q PP P+
Sbjct: 697 PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPT 755
>AL356072-2|CAH70516.1| 1566|Homo sapiens arginine-glutamic acid
dipeptide (RE) repeats protein.
Length = 1566
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +1
Query: 577 PPXGQKPXKGRVAGFXP*G-PPPLNXHXKNQPXXQRXRXPXGL*KXQXFPPXNLPRAPS 750
PP KP P PPPL ++QP P GL + Q PP P+
Sbjct: 965 PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPT 1023
>AL096855-2|CAI19209.1| 1298|Homo sapiens arginine-glutamic acid
dipeptide (RE) repeats protein.
Length = 1298
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +1
Query: 577 PPXGQKPXKGRVAGFXP*G-PPPLNXHXKNQPXXQRXRXPXGL*KXQXFPPXNLPRAPS 750
PP KP P PPPL ++QP P GL + Q PP P+
Sbjct: 697 PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPT 755
>AL096855-1|CAI19208.1| 1566|Homo sapiens arginine-glutamic acid
dipeptide (RE) repeats protein.
Length = 1566
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +1
Query: 577 PPXGQKPXKGRVAGFXP*G-PPPLNXHXKNQPXXQRXRXPXGL*KXQXFPPXNLPRAPS 750
PP KP P PPPL ++QP P GL + Q PP P+
Sbjct: 965 PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPT 1023
>AF041104-1|AAC28264.1| 1012|Homo sapiens atrophin-1 like protein
protein.
Length = 1012
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +1
Query: 577 PPXGQKPXKGRVAGFXP*G-PPPLNXHXKNQPXXQRXRXPXGL*KXQXFPPXNLPRAPS 750
PP KP P PPPL ++QP P GL + Q PP P+
Sbjct: 411 PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPT 469
>AF016005-1|AAC31120.1| 1012|Homo sapiens atrophin-1 related protein
protein.
Length = 1012
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +1
Query: 577 PPXGQKPXKGRVAGFXP*G-PPPLNXHXKNQPXXQRXRXPXGL*KXQXFPPXNLPRAPS 750
PP KP P PPPL ++QP P GL + Q PP P+
Sbjct: 411 PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPT 469
>AB036737-1|BAA95898.1| 1566|Homo sapiens RERE protein.
Length = 1566
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +1
Query: 577 PPXGQKPXKGRVAGFXP*G-PPPLNXHXKNQPXXQRXRXPXGL*KXQXFPPXNLPRAPS 750
PP KP P PPPL ++QP P GL + Q PP P+
Sbjct: 965 PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPT 1023
>AB007927-1|BAA32303.3| 1552|Homo sapiens KIAA0458 protein protein.
Length = 1552
Score = 31.1 bits (67), Expect = 6.0
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +1
Query: 577 PPXGQKPXKGRVAGFXP*G-PPPLNXHXKNQPXXQRXRXPXGL*KXQXFPPXNLPRAPS 750
PP KP P PPPL ++QP P GL + Q PP P+
Sbjct: 951 PPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPASHPPT 1009
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,620,268
Number of Sequences: 237096
Number of extensions: 1070021
Number of successful extensions: 3391
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3261
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12214492840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -