Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N09
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.8  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.4  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    26   8.5  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -2

Query: 407 TPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFR 228
           TPS +    +  P  +S     L  ++  E ++S   SL S+DP+  STF SL    T  
Sbjct: 129 TPSSTESSSLLDPSSVSSA--ILPSSTSVEVSISS-SSLSSSDPLTSSTFSSLS-SSTSS 184

Query: 227 AAPEVPS 207
           + P V S
Sbjct: 185 SQPSVSS 191


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 404 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRS 294
           PS +  PG  VP  +S  P   S  S + A+LSL  S
Sbjct: 310 PSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNS 346


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +1

Query: 628 LFRSPSSSLDFNAGFKKFDTPFYRSSWEPNVGXXXXXXXXXVLCESSKIIIPFHIL 795
           L  +P+SS+ ++      D   YR+ WE   G         +L  S   +  FH+L
Sbjct: 325 LCSAPTSSIAYHEEEINPDNTIYRAKWEEYFGGVILHNAFFILHVSLGEVPDFHLL 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,591
Number of Sequences: 5004
Number of extensions: 54161
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)