Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_N09
(906 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11) 30 2.2
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0) 29 3.9
SB_6115| Best HMM Match : efhand (HMM E-Value=0.22) 29 3.9
SB_37335| Best HMM Match : Sigma54_activat (HMM E-Value=7.8) 29 6.8
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 28 9.0
SB_44152| Best HMM Match : CRAM_rpt (HMM E-Value=0.021) 28 9.0
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 28 9.0
>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
Length = 2297
Score = 30.3 bits (65), Expect = 2.2
Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 1/175 (0%)
Frame = +1
Query: 181 QAGSFTVNSDGTSGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLALDNVNGHGL 360
++G V G ++ + D NV I + DFN + + A +++ G
Sbjct: 589 KSGDIDVEGPELKGPKVEGDIDTPDVNVKGDIDTPDFNVKGDIEGPDA-----DIDSPGW 643
Query: 361 SLTGTRIPGF-GEQLGVAGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGVDY 537
G ++P F G G GK + + D+ F N I + P+ N L G +D
Sbjct: 644 KFKGPKMPKFKGPSFGGKGK-----SGDIDIEGPDFDGPNVKGDI-DTPDIN-LKGDIDT 696
Query: 538 MFKQKVGASLSAAHSDVINRNDYSAGGKLNLFRSPSSSLDFNAGFKKFDTPFYRS 702
V + +D+ G K+ F+ PS +G FD P ++S
Sbjct: 697 P-DVNVKGDIDGPDADLHGPGWKFKGPKMPKFKGPSFGGKGKSGDIDFDGPDFKS 750
Score = 29.9 bits (64), Expect = 3.0
Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 1/171 (0%)
Frame = +1
Query: 181 QAGSFTVNSDGTSGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLALDNVNGHGL 360
++G V G ++ + D NV I + DFN + + A ++NG
Sbjct: 181 KSGDIDVEGPELKGPKVEGDIDTPDVNVKGDIDTPDFNVKGDIDGPDA-----DINGPSW 235
Query: 361 SLTGTRIPGF-GEQLGVAGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGVDY 537
G ++P F G G GK + + D+ F N I + P+ N L G +D
Sbjct: 236 KFKGPKMPKFKGPSFGGKGK-----SGDIDIEGPDFDGPNVKGDI-DTPDIN-LKGDIDT 288
Query: 538 MFKQKVGASLSAAHSDVINRNDYSAGGKLNLFRSPSSSLDFNAGFKKFDTP 690
V + +DV G K+ F+ PS +G +D P
Sbjct: 289 P-DVNVKGDIDGPDADVHGPGWKFKGPKMPKFKGPSFGGKGKSGDIDYDGP 338
>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 2538
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -2
Query: 503 GALGMALGEFLIANALALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSP 354
G + M + + LIA A+++ N L +PA S PKP V V+ SP
Sbjct: 395 GDMDMQISQILIAAGYAVKTSEFNPNPLRIPAAKSTPPKPA-PVQVQASP 443
>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
Length = 822
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 157 HVPTRARRQAGSFTVNS---DGTSGAALKVPLTGNDKNVLSAIGSADFNDRHK 306
HVP + G + NS T G+ + +PL ++K V+ +G ND HK
Sbjct: 526 HVP-KVGSHGGVYFWNSFRNKDTDGSLIVLPLKDHEKRVIGLLGVDTLNDSHK 577
>SB_37335| Best HMM Match : Sigma54_activat (HMM E-Value=7.8)
Length = 206
Score = 28.7 bits (61), Expect = 6.8
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -2
Query: 413 PATPSCSP--KPGMRVPVRLSPCPFTLSRASPA-EAALSLWRSLKSADPM 273
P TPSCSP + + +PVRL LS +P EA + L S+K+ P+
Sbjct: 10 PLTPSCSPLERDVLALPVRLG----GLSMTNPCLEADIELSSSVKATAPL 55
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/72 (26%), Positives = 27/72 (37%)
Frame = -2
Query: 356 PCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACL 177
P P L R PA L L+ P S LP+ +P+ ++ P
Sbjct: 619 PTPLPLERPVPAVTRLPTHLPLEQPVPAVTSLPTHLPLERPLPDVTRLPTHLPLERPVPA 678
Query: 176 RARVGTCLPLAK 141
R+ T LPL +
Sbjct: 679 VTRLPTDLPLER 690
>SB_44152| Best HMM Match : CRAM_rpt (HMM E-Value=0.021)
Length = 697
Score = 28.3 bits (60), Expect = 9.0
Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 7/161 (4%)
Frame = +1
Query: 181 QAGSFTVNSDGTSGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLALDNVNGHGL 360
++G V G G +K + D N+ I + DFN + + A +++ G
Sbjct: 276 KSGDIEVEGPGFKGPKIKGDIDTPDINLKGDIDTPDFNVKGDIDGPDA-----DIDSPGW 330
Query: 361 SLTGTRIPGF-GEQLGVAGKVNLFHNNNHDL-SAKAFAIRNSPSAIPNAPNFNTLGGGVD 534
G ++P G G GK + D K A P A P+ + GG
Sbjct: 331 KFKGPKMPKLKGPSFGGKGKSGDSDYDGPDFDKPKVKANVEVPDASIKGPDIDGSAGGRI 390
Query: 535 YMFKQKV---GASLSAAH--SDVINRNDYSAGGKLNLFRSP 642
+ + G + A H S + +D+S G + F+ P
Sbjct: 391 NLPDANIKGPGLKIKADHEESSSDSDDDHSHGFSMPKFKMP 431
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 28.3 bits (60), Expect = 9.0
Identities = 23/87 (26%), Positives = 36/87 (41%)
Frame = -2
Query: 428 NKLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSL 249
+ + + ATPS SP P VP L + ++P+ AA S+ + L T
Sbjct: 218 SSVVVAATPSTSPVPATFVP-SLPTVASASTLSAPSVAASSIATPVNKTVVATLKTL--A 274
Query: 248 PVRGTFRAAPEVPSEFTVKLPACLRAR 168
PV R PS +++ P + R
Sbjct: 275 PVVVVSRGVSISPSSSSIRTPVSIAVR 301
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,127,429
Number of Sequences: 59808
Number of extensions: 426608
Number of successful extensions: 1142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -