Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N08
         (855 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P13276 Cluster: Apolipophorin-3 precursor; n=11; Ditrys...    61   3e-08
UniRef50_Q55898 Cluster: Polyphosphate kinase; n=21; Bacteria|Re...    36   1.3  

>UniRef50_P13276 Cluster: Apolipophorin-3 precursor; n=11;
           Ditrysia|Rep: Apolipophorin-3 precursor - Manduca sexta
           (Tobacco hawkmoth) (Tobacco hornworm)
          Length = 189

 Score = 61.3 bits (142), Expect = 3e-08
 Identities = 32/51 (62%), Positives = 38/51 (74%)
 Frame = +3

Query: 246 QQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLXGSARRTRTGXAKE 398
           +QFNSL  SK+ QDF+KA KDGS+SVLQQL+AF+ SL G A     G AKE
Sbjct: 48  EQFNSLVNSKNTQDFNKALKDGSDSVLQQLSAFSSSLQG-AISDANGKAKE 97



 Score = 52.4 bits (120), Expect = 1e-05
 Identities = 28/45 (62%), Positives = 34/45 (75%), Gaps = 4/45 (8%)
 Frame = +2

Query: 116 MAAKFVV-LFACIALAQGAMVRRDAP---DFFKDIEHHTKEFHKT 238
           MAAKFVV L AC+AL+  AMVRRDAP   + F+++E H KEF KT
Sbjct: 1   MAAKFVVVLAACVALSHSAMVRRDAPAGGNAFEEMEKHAKEFQKT 45


>UniRef50_Q55898 Cluster: Polyphosphate kinase; n=21; Bacteria|Rep:
           Polyphosphate kinase - Synechocystis sp. (strain PCC
           6803)
          Length = 728

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 24/90 (26%), Positives = 39/90 (43%)
 Frame = -3

Query: 355 RLLAKALSCCSTDSEPSFQALLKSCASFDLVSELNCCF*SLMELLGVVFDVLEEVGSVAS 176
           R++AK  S   T    +  A  ++    DL+    CC    +E +     V+  +G +  
Sbjct: 565 RIVAKMNSLVDTQIIRALYAASQAGVQIDLIVRGICCLRPGVENVSENIRVISVIGRLLE 624

Query: 175 HHRSLGQSDAGEENYELGGHDVLSRD*VRR 86
           H R     + GEE   +G  D +SR+  RR
Sbjct: 625 HSRIFYFHNGGEEEIYIGSADWMSRNLTRR 654


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,382,410
Number of Sequences: 1657284
Number of extensions: 7114754
Number of successful extensions: 29158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26384
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75423184424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)