Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N08
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.3  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 40  LNVGH-TPLCCSPVRISSALSLSTVHHGRQVRSSLRLH 150
           L++G  T L CS  R    LS+S +  GR +  S R+H
Sbjct: 622 LHLGERTTLTCSVTRGDLPLSISWLKDGRAMGPSERVH 659


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
 Frame = +1

Query: 124 QVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP*DF----RNNSLTRSPSQRTHRTS 291
           ++  +LR+HR G  +  A    R         Q +         NN LTR PS R ++  
Sbjct: 253 ELELTLRIHRGGGTNTDARHLFRTASSTPEDLQDLEEPLTTIQHNNCLTRIPSTRINKQH 312

Query: 292 AR 297
            R
Sbjct: 313 TR 314


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 175 HHRSLGQSDAGEENYELGGHDVL 107
           HH+    + AG +   L GH VL
Sbjct: 920 HHQIQVSTSAGLQTIRLSGHSVL 942


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,852
Number of Sequences: 438
Number of extensions: 1971
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)