Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N08
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23040.1 68414.m02878 hydroxyproline-rich glycoprotein family...    31   0.74 
At2g48160.1 68415.m06031 PWWP domain-containing protein                30   2.3  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    29   5.2  
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t...    28   6.9  

>At1g23040.1 68414.m02878 hydroxyproline-rich glycoprotein family
           protein contains proline-rich domains,
           INTERPRO:IPR000694
          Length = 144

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +1

Query: 430 NPPGXXXPPXGPPXXFXKKKTXXPPPPXKK 519
           NPP    PP  PP          PPPP KK
Sbjct: 58  NPPPPSPPPPSPPPPACPPPPALPPPPPKK 87


>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +1

Query: 73   PVRISSALSLSTVHH-GRQVR--SSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP 231
            P+R++  LS ST+H+ G +    S ++L  S P++DG+  + R    H  PH   P
Sbjct: 1184 PLRMNPPLSGSTMHYQGPESSYISGVQLTNSIPQADGSNFQHRPYPSHPHPHPPPP 1239


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 433 PPGXXXPPXGPPXXFXKKKTXXPPPPXKK 519
           PP    PP  PP          PPPP KK
Sbjct: 389 PPSAAAPPPPPPPKKGPAAPPPPPPPGKK 417


>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 334

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 433 PPGXXXPPXGPPXXFXKKKTXXPPPPXKK 519
           PP    PP  PP    K  T  PPP   K
Sbjct: 124 PPSTPKPPTKPPPSTPKPPTTKPPPSTPK 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,903,084
Number of Sequences: 28952
Number of extensions: 171373
Number of successful extensions: 954
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)