Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N07
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...   172   7e-44
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...   117   2e-27
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    27   4.8  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.3  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    26   8.4  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score =  172 bits (418), Expect = 7e-44
 Identities = 82/120 (68%), Positives = 94/120 (78%)
 Frame = +2

Query: 407 YEKLTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQEIERGASYLRLRPDRVAMQDATAQ 586
           Y+++  NLE+VKKRL R LT SEKILY HLDDP  Q+IERG SYL+LRPDRVA QDATAQ
Sbjct: 41  YQRIKDNLEIVKKRLNRPLTYSEKILYGHLDDPVNQDIERGVSYLKLRPDRVACQDATAQ 100

Query: 587 MAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEVYKFLETAGANMESG 766
           MA+LQF+S+G+P VAVP T+HCDHLIEA  GG  DL RA   NKEVY FL+TA A    G
Sbjct: 101 MAILQFMSAGMPEVAVPVTVHCDHLIEAYEGGPIDLERANVTNKEVYDFLQTACAKYNIG 160



 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 27/41 (65%), Positives = 29/41 (70%)
 Frame = +3

Query: 774 PGSGIIHQIILENYASLXLLMIGTDSHTPNXXXXXXXCIGV 896
           PGSGIIHQI+LENYA    L+IGTDSHTPN        IGV
Sbjct: 164 PGSGIIHQIVLENYAFPGGLLIGTDSHTPNAGGLGMVAIGV 204


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score =  117 bits (282), Expect = 2e-27
 Identities = 60/121 (49%), Positives = 84/121 (69%), Gaps = 7/121 (5%)
 Frame = +2

Query: 404 PYEKLTKNLEVVKKRL-GRELTLSEKILYSHLDDPK------GQEIERGASYLRLRPDRV 562
           PYEKL   L+ V+K L G++LTL+EK+LYSHL +P+           RG+ YL+L PDRV
Sbjct: 37  PYEKLMGKLQQVRKFLPGQKLTLAEKVLYSHLVNPEESFSGVSPSDIRGSLYLKLNPDRV 96

Query: 563 AMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEVYKFLET 742
           AMQDA+AQMA+LQF++ GL +  +P++IHCDHLI    G   D+  +   NKE++ FL++
Sbjct: 97  AMQDASAQMALLQFMTCGLEKTMIPASIHCDHLIVGHRGANSDIPDSIANNKEIFDFLQS 156

Query: 743 A 745
           A
Sbjct: 157 A 157



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = +3

Query: 774 PGSGIIHQIILENYASLXLLMIGTDSHTPNXXXXXXXCIGV 896
           PGSGIIHQI+LENYA+   +M+GTDSHTPN        IGV
Sbjct: 168 PGSGIIHQIVLENYAAPGGMMLGTDSHTPNAGGLGMIAIGV 208


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 759 SILAPAVSKN-LYTSLLRSLALAKSFSPPT 673
           SI+AP +SK  L   LLRSLA+ ++   PT
Sbjct: 405 SIIAPKLSKKTLNNELLRSLAVVQNDQHPT 434


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 303  GGTL*NPTKMFQRISIDRRRGPGGDVQVRQGT 398
            GG++ N  +   ++ ID  R PG ++ V QG+
Sbjct: 1226 GGSIINKIRKIAQVKIDVPRTPGDEIVVVQGS 1257


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 644 IHCDHLIEAQVGGEKDLARAKDLNKEVYKFLE 739
           IH DH IE  +   + LA+ K +N  V  F+E
Sbjct: 124 IHTDHSIEVIITEMEALAKRKLVNDAVKHFIE 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,442,574
Number of Sequences: 5004
Number of extensions: 67936
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)