Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N07
         (899 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)               75   6e-14
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.026
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   28   8.9  
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)                     28   8.9  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            28   8.9  

>SB_52142| Best HMM Match : Recombinase (HMM E-Value=8.2)
          Length = 193

 Score = 75.4 bits (177), Expect = 6e-14
 Identities = 35/52 (67%), Positives = 40/52 (76%)
 Frame = +2

Query: 611 SGLPRVAVPSTIHCDHLIEAQVGGEKDLARAKDLNKEVYKFLETAGANMESG 766
           S   +VAVPSTIHCDHLIEA+ GG +DLA+AKD+NKEVY FL TA A    G
Sbjct: 102 SSWQKVAVPSTIHCDHLIEAKDGGSQDLAKAKDINKEVYNFLATASAKYGVG 153



 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +3

Query: 771 EPGSGIIHQIILENYASLXLLMIGTDSHTPN 863
           +PGSGIIHQI+LENYA   +++IGTDSHTPN
Sbjct: 156 KPGSGIIHQIVLENYAFPGVMLIGTDSHTPN 186


>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 36.7 bits (81), Expect = 0.026
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
 Frame = +2

Query: 425 NLEVVKKRLGRELTLSEKILYSHLDDPKGQEIE----RGASYLRLRPDRVA-MQDATAQM 589
           ++EVV K+ G+E+ +++ +  ++L D    +          +LR+R +R   ++ AT   
Sbjct: 428 DIEVVYKK-GKEMYIADTLSRAYLPDDTEHKDSFAKINAVGHLRIREERPRQLKKATETD 486

Query: 590 AMLQFISSGLPRVAVPSTIHC---DHLIEAQVGGEKDLARAKD 709
             LQ + SG  RV VP ++     DHL  + +GGE  L RA++
Sbjct: 487 DTLQTLKSG-ERVIVPESMRKEIKDHLHISHLGGESMLRRARE 528


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 599  VTLPFVQWRLAWPHGRDAGGDNLRRVQFPVLWGHPS 492
            +TLP  +W++A+  G     +N R+V + VL+G  S
Sbjct: 943  LTLPLRRWKIAFRFGAGTSDNNGRKVFYTVLFGQSS 978


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 628 YTGKAGRDKL*HCHLCSGVLHG 563
           + G AG+DK+  C +CS   HG
Sbjct: 824 FCGSAGKDKMFFCKVCSEPFHG 845


>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
          Length = 458

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 628 YTGKAGRDKL*HCHLCSGVLHG 563
           + G AG+DK+  C +CS   HG
Sbjct: 165 FCGSAGKDKMFFCKVCSEPFHG 186


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 782 WYYPSDHSGELCVPGSTHDRXRLPHT*W 865
           WY+PS     LC P  TH     P   W
Sbjct: 411 WYHPSKTQAYLCHPTKTHANWNHPSKTW 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,444,636
Number of Sequences: 59808
Number of extensions: 548849
Number of successful extensions: 1194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)