Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N07
         (899 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35830.1 68417.m05090 aconitate hydratase, cytoplasmic / citr...    31   1.4  
At5g22820.1 68418.m02668 expressed protein                             29   3.2  
At2g25730.1 68415.m03084 expressed protein                             29   3.2  
At2g05710.1 68415.m00611 aconitate hydratase, cytoplasmic, putat...    29   3.2  
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat...    29   4.2  
At2g15680.1 68415.m01795 calmodulin-related protein, putative si...    28   9.7  

>At4g35830.1 68417.m05090 aconitate hydratase, cytoplasmic / citrate
           hydro-lyase / aconitase (ACO) identical to SP|Q42560
           Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate
           hydro-lyase) (Aconitase) {Arabidopsis thaliana};
           contains Pfam profiles PF00330: Aconitase family
           (aconitate hydratase), PF00694: Aconitase C-terminal
           domain
          Length = 898

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 9/40 (22%)
 Frame = +3

Query: 765 VLEPGSGIIHQIILENYASL-----XLL----MIGTDSHT 857
           V+ PGSGI+HQ+ LE  A +      LL    ++GTDSHT
Sbjct: 173 VVPPGSGIVHQVNLEYLARVVFNTNGLLYPDSVVGTDSHT 212


>At5g22820.1 68418.m02668 expressed protein
          Length = 490

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 392 LSNLDIATWAAAAVNGDTLKHLCWISEST 306
           LS     +WA    + D L+H+ WI+E+T
Sbjct: 232 LSGAGCTSWAHCLESDDILRHILWIAENT 260


>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 531  QVISACVPTVWPCKTPLHKWQCYNLSLPAFP 623
            +VISACVP V+P ++  H W C  + +P  P
Sbjct: 1081 EVISACVPPVYPPRSG-HGWACIPV-IPTTP 1109


>At2g05710.1 68415.m00611 aconitate hydratase, cytoplasmic, putative
           / citrate hydro-lyase/aconitase, putative nearly
           identical to SP|P49608 Aconitate hydratase, cytoplasmic
           (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
           {Cucurbita maxima}; contains Pfam profiles PF00330:
           Aconitase family (aconitate hydratase), PF00694:
           Aconitase C-terminal domain
          Length = 990

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 9/40 (22%)
 Frame = +3

Query: 765 VLEPGSGIIHQIILEN-----YASLXLL----MIGTDSHT 857
           V+ PGSGI+HQ+ LE      + +  LL    ++GTDSHT
Sbjct: 265 VVPPGSGIVHQVNLEYLGRVVFNTKGLLYPDSVVGTDSHT 304


>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
           / citrate hydro-lyase/aconitase, putative strong
           similarity to SP|P49608 Aconitate hydratase, cytoplasmic
           (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
           {Cucurbita maxima}; contains Pfam profiles PF00330:
           Aconitase family (aconitate hydratase), PF00694:
           Aconitase C-terminal domain
          Length = 995

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 9/40 (22%)
 Frame = +3

Query: 765 VLEPGSGIIHQIILEN-----YASLXLL----MIGTDSHT 857
           V+ PGSGI+HQ+ LE      + S   L    ++GTDSHT
Sbjct: 270 VVPPGSGIVHQVNLEYLGRVVFNSKGFLYPDSVVGTDSHT 309


>At2g15680.1 68415.m01795 calmodulin-related protein, putative
           similar to calmodulin-related protein 2, touch-induced
           SP:P25070 from [Arabidopsis thaliana]
          Length = 187

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -1

Query: 671 GLRSSD-HNEWWTVQLHGEGR 612
           G+RSSD  N +WT  L+G+G+
Sbjct: 116 GIRSSDIRNSFWTFDLNGDGK 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,543,535
Number of Sequences: 28952
Number of extensions: 381188
Number of successful extensions: 822
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)