Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N06
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1125 - 24162298-24162586,24162730-24162783,24162940-241630...    29   5.0  
12_01_0580 + 4745639-4746528,4746666-4746747                           29   6.6  
11_04_0329 - 16442298-16443734                                         29   6.6  

>07_03_1125 -
           24162298-24162586,24162730-24162783,24162940-24163035,
           24163149-24163190,24163688-24163756,24164262-24164284
          Length = 190

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 378 HQLEKRACVNSKVSVTLCISVRIRPMCRNDCRSPCSLRK 262
           HQ++K + V  +    L IS+ I P   ND    CS R+
Sbjct: 128 HQVDKDSLVRKQALYILRISLDIFPSSENDAAQQCSRRR 166


>12_01_0580 + 4745639-4746528,4746666-4746747
          Length = 323

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 80  VAIGAFPNHGLSLRCVLDVSHE**ANNEADMRAGFWQFGPXFRLH 214
           + +GA+P H L LRCV ++S E       +++A  W      RLH
Sbjct: 279 ITVGAYPGHRLQLRCV-ELSRE----KFGEVKARVWWEENKARLH 318


>11_04_0329 - 16442298-16443734
          Length = 478

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +1

Query: 85  DRCFS*PRAFSSLRAXXXXXXXXXXXXXYASRLLAIRALXSPTLSYTRTIRRRRSVKNSF 264
           DRC + PRA +++ A              ASRLLA  A  SP  +  R +       NSF
Sbjct: 26  DRCAT-PRALAAVHAAMLVSGRLADDAFAASRLLAAHAALSPPGAVLRLLASLPCAPNSF 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,315,372
Number of Sequences: 37544
Number of extensions: 316996
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)