Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N06
         (895 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16280.1 68418.m01901 expressed protein                             29   4.2  
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ...    29   4.2  

>At5g16280.1 68418.m01901 expressed protein
          Length = 1265

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -3

Query: 164 LRCWLITHD*RQARSEEKARG*EKHRSQHDVSDSNIVCLQNLKE 33
           L+ +L+ HD + A +E  ++   + RSQ   ++ N++C  + KE
Sbjct: 190 LKHYLLVHDNQDATTERTSKVLSEMRSQFGNNECNLLCTNSSKE 233


>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 310

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 123 ACLTSVMSDKPTTKPICEQAFGN 191
           AC+T++ S  P   PI EQ+F N
Sbjct: 13  ACVTAINSSPPPLSPISEQSFNN 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,881,790
Number of Sequences: 28952
Number of extensions: 262831
Number of successful extensions: 551
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)