Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_N05
(898 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 27 0.23
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 1.2
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 24 1.6
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 24 2.2
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 24 2.2
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 3.8
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 23 3.8
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 3.8
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.6
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 22 6.6
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 22 8.7
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 22 8.7
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 27.1 bits (57), Expect = 0.23
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 385 SHVLSCVIXLILWITVLPPLSELIPLAA 302
S +LS V+ L+L +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 24.6 bits (51), Expect = 1.2
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 406 GLLLAFCSHVL-SCVIXLILWITVLPPLSELIPL 308
G ++ CS +L S + +L ++PP S IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 24.2 bits (50), Expect = 1.6
Identities = 8/25 (32%), Positives = 18/25 (72%)
Frame = -3
Query: 101 SNSITNFNKIKHFFHCILNLKGIPI 27
+N+ N+NK ++ + I+N++ IP+
Sbjct: 335 NNNYNNYNKKLYYKNYIINIEQIPV 359
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 23.8 bits (49), Expect = 2.2
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -3
Query: 98 NSITNFNKIKHFFHCILNLKGIPI 27
N+ N+NK ++ + I+N++ IP+
Sbjct: 95 NNYNNYNKKLYYKNYIINIEQIPV 118
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 23.8 bits (49), Expect = 2.2
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +3
Query: 498 WRNPTGL*RYQAFPPGSSLXALSCFRPCRLPDTCPPF 608
+ NP RYQ P G L L RL D P F
Sbjct: 91 YENPDEEKRYQEHPNGKILRELQTDYDRRLHDNSPSF 127
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.0 bits (47), Expect = 3.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 385 SHVLSCVIXLILWITVLPPLSELIPL 308
S +LS + +L ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 23.0 bits (47), Expect = 3.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -3
Query: 101 SNSITNFNKIKHFFHCILNLKGIPI 27
+N+I N N K ++ I+N++ IP+
Sbjct: 320 NNTIHNNNYNKKLYYNIINIEQIPV 344
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 23.0 bits (47), Expect = 3.8
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -3
Query: 86 NFNKIKHFFHCILNLKGIPI 27
N+N K ++ I+N++ IP+
Sbjct: 345 NYNNYKKLYYNIINIEQIPV 364
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 6.6
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -1
Query: 385 SHVLSCVIXLILWITVLPPLSELIPL 308
S ++S + +L + ++PP S ++PL
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVVPL 306
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 6.6
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -1
Query: 385 SHVLSCVIXLILWITVLPPLSELIPL 308
S ++S + +L + ++PP S ++PL
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVVPL 306
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.2 bits (45), Expect = 6.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 385 SHVLSCVIXLILWITVLPPLSELIPL 308
S +LS + +L ++PP S +PL
Sbjct: 273 SILLSLTVFFLLLAEIIPPTSLTVPL 298
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.8 bits (44), Expect = 8.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -3
Query: 101 SNSITNFNKIKHFFHCILNLKGIPI 27
+N+ N N K ++ I+N++ IP+
Sbjct: 100 NNNYNNNNYNKKLYYNIINIEQIPV 124
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.8 bits (44), Expect = 8.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -3
Query: 101 SNSITNFNKIKHFFHCILNLKGIPI 27
+N+ N N K ++ I+N++ IP+
Sbjct: 100 NNNYNNNNYNKKLYYNIINIEQIPV 124
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,906
Number of Sequences: 438
Number of extensions: 5347
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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