Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_N04
(884 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 3e-41
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 116 3e-26
SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.044
SB_33464| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0019) 35 0.10
SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11) 34 0.13
SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09) 34 0.18
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10) 33 0.41
SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.41
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 31 0.94
SB_36856| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-05) 31 1.2
SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.2
SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048) 30 2.2
SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_28587| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-25) 30 2.9
SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05) 30 2.9
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 30 2.9
SB_20350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_9940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 6.6
SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011) 29 6.6
SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8) 29 6.6
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21) 28 8.7
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 28 8.7
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0) 25 9.3
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 165 bits (402), Expect = 3e-41
Identities = 76/189 (40%), Positives = 110/189 (58%)
Frame = +2
Query: 200 NENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRVVFTDSIHPY 379
+ N CVVC + + + ++G+CDHPVC++C RMRVL +N C +CR +L V P+
Sbjct: 10 SSNLCVVCCEEIEFSAVGKCDHPVCYKCCVRMRVLKQENYCTVCRSELSMVYLVAHPAPW 69
Query: 380 KELGNRXIPXIDCLKDNTKLYSVLKT*KMHMKTCWRIGVKSVIRYHRSATLXLLNDHMRR 559
+ + + + K +Y K + ++K T L DHMR+
Sbjct: 70 VSMKEKALKGLSDKKYG--IYYETKEIRDNVKFLLEHRCYICPEQRPFQTFKKLEDHMRQ 127
Query: 560 VHERFFCDLCVNHLKIFTNERRCYTRQELAHHRRKGDLDDTSHRGHPLCXFCEXRFMDPD 739
H+ +FC LCV H F++ER+ YTRQ+LA HRR GD DD SH+GHPLC FC+ RF+D D
Sbjct: 128 THQLYFCALCVKHYTKFSHERKAYTRQDLARHRRIGDSDDKSHKGHPLCQFCDERFLDND 187
Query: 740 ELYRHLRRS 766
EL+ HLR++
Sbjct: 188 ELHGHLRKN 196
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 116 bits (278), Expect = 3e-26
Identities = 47/80 (58%), Positives = 60/80 (75%)
Frame = +2
Query: 527 TLXLLNDHMRRVHERFFCDLCVNHLKIFTNERRCYTRQELAHHRRKGDLDDTSHRGHPLC 706
T L DHMR+ H+ +FC LCV H F++ER+ YTRQ+LA HRR GD DD SH+GHPLC
Sbjct: 150 TFKKLEDHMRQTHQLYFCALCVKHYTKFSHERKAYTRQDLARHRRIGDSDDKSHKGHPLC 209
Query: 707 XFCEXRFMDPDELYRHLRRS 766
FC+ RF+D DEL+ HLR++
Sbjct: 210 QFCDERFLDNDELHGHLRKN 229
Score = 66.5 bits (155), Expect = 3e-11
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +2
Query: 200 NENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRVVFTDSIHP 376
+ N CVVC + + + ++G+CDHPVC++C RMRVL +N C +CR +L + ++ P
Sbjct: 10 SSNLCVVCCEEIEFSAVGKCDHPVCYKCCVRMRVLKQENYCTVCRSELSMIFIKNASIP 68
Score = 36.3 bits (80), Expect = 0.033
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +1
Query: 406 LXRLFERQYKIVFCSEDIKNAYENLLENRCKICDKIPPFRNFXFAE*SHEKGS*KVFL*P 585
L L +++Y I + +++I++ + LLE+RC IC + PF+ F E H + + +++
Sbjct: 110 LKGLSDKKYGIYYETKEIRDNVKFLLEHRCYICPEQRPFQTFKKLE-DHMRQTHQLYFCA 168
Query: 586 LC 591
LC
Sbjct: 169 LC 170
>SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 35.9 bits (79), Expect = 0.044
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +2
Query: 170 NTTIMSEAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLR 349
N M E Q + CV+C +N + C H VC C T + + ++CP+CR D++R
Sbjct: 526 NIPDMDENQGTQ--CVICLENQRNVVLLNCGH-VC-SCRTCAQQI---HQCPVCRGDIVR 578
Query: 350 VV 355
+V
Sbjct: 579 MV 580
>SB_33464| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0019)
Length = 413
Score = 34.7 bits (76), Expect = 0.10
Identities = 27/96 (28%), Positives = 43/96 (44%)
Frame = +2
Query: 257 CDHPVCFECSTRMRVLCLQNECPICRKDLLRVVFTDSIHPYKELGNRXIPXIDCLKDNTK 436
C H VC C +M++ +CPICRK +S+ P L R + K+ +
Sbjct: 38 CAHNVCLSCLKKMKIEQGFIKCPICRKKTKITNPAESL-PTNSLLVRLVENAPGRKEELE 96
Query: 437 LYSVLKT*KMHMKTCWRIGVKSVIRYHRSATLXLLN 544
L LKT K + + V S+ ++S + +LN
Sbjct: 97 LRKELKTAKRVLDAKLK-KVLSIFSTYQSLSREILN 131
>SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)
Length = 471
Score = 34.3 bits (75), Expect = 0.13
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +2
Query: 56 SRCSSKWYLSKTNS*ASTYSQFNKTLGYRNAFTES*INNTTIMSEA----QANENTCVVC 223
S S + +S+ N S T + F+E+ + N I S A Q ++ C +C
Sbjct: 275 SPSSPEQEMSELNGTQSPKVDNGATKDCNDLFSEN-LENGDIRSPASNTEQLDDFECKLC 333
Query: 224 FKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRVV 355
F +L C H C +C R L + ECP CR L +++
Sbjct: 334 FNLLLEPVTSLCGHSFCRDC--LYRSLDHRVECPCCRAPLTKIL 375
>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
Length = 765
Score = 33.9 bits (74), Expect = 0.18
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 185 SEAQANENTCVVCFKNVLYYSIGECDHP-VCFECSTRMRVLCLQNECPICRKDLLRVVFT 361
S+ ++ TC+VC + ++ C H VC C +R L+++CP+CR+ ++R F
Sbjct: 679 SQQRSTHGTCIVCQNLPVTRALLPCRHACVCGSCFSR-----LESKCPLCRQ-VIRSYFL 732
Query: 362 DSIHP 376
P
Sbjct: 733 TQEEP 737
>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
Length = 337
Score = 32.7 bits (71), Expect = 0.41
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 170 NTTIMSEAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICR 334
++T E + TC +C + ++ + C+H C C T+ V +CP+CR
Sbjct: 23 DSTQQDEKDIEDFTCPICLQLLVEPVVLPCEHEFCKMCFTQ-NVQEANLQCPMCR 76
>SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 32.7 bits (71), Expect = 0.41
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +2
Query: 152 TES*INNTTIMSEAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRM--RVLCLQNECP 325
TE+ N TT M+ Q +E C +C C H +C +C M R CP
Sbjct: 2 TETSRNRTTAMA-VQLDELLCPICLDEFKEPKTLSCMHDLCRKCLEDMAARESSRVIRCP 60
Query: 326 ICRKDL 343
+CR ++
Sbjct: 61 LCRSEI 66
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 31.5 bits (68), Expect = 0.94
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 188 EAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICR 334
E +E +C+VC + + + C H C C L +N CPICR
Sbjct: 363 EEMEDEFSCIVCQELFIRATTLTCSHSFCEYCLQSW--LRKRNTCPICR 409
>SB_36856| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-05)
Length = 406
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 200 NENTCVVCFKNVLY-YSIGECDHPVCFECSTRM--RVLCLQNECPICR 334
+E C VC + + S+ C H VC EC ++ R ECPICR
Sbjct: 18 DEGACPVCIEVFVEPKSLPSCAHNVCRECLEKITKRNSIRFVECPICR 65
>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1296
Score = 31.1 bits (67), Expect = 1.2
Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 15/96 (15%)
Frame = +2
Query: 527 TLXLLNDHMRRVH-ERFFCDLC----------VNHLKIFTNER--RCYTRQELAHHRRKG 667
+L L HMRR+H + F C C +HL+ T E+ RC + R
Sbjct: 952 SLDALQGHMRRMHQDPFECPCCNKVFLKQRQYSHHLRTHTGEQPYRCDQCDKKYDRVRSL 1011
Query: 668 DLDDTSHRG-HP-LCXFCEXRFMDPDELYRHLRRST 769
L H G P C CE F D L H+R T
Sbjct: 1012 TLHKMKHSGLRPHKCTVCERGFYTSDSLANHVRVHT 1047
>SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/82 (26%), Positives = 34/82 (41%)
Frame = +2
Query: 524 ATLXLLNDHMRRVHERFFCDLCVNHLKIFTNERRCYTRQELAHHRRKGDLDDTSHRGHPL 703
AT L HM ++F CD+C +++ L HR+ + +H
Sbjct: 114 ATPERLAKHMETHKKKFGCDICEKEFVFYSS---------LEKHRKVHQERNPNH----- 159
Query: 704 CXFCEXRFMDPDELYRHLRRST 769
C CE F P +L H+R+ T
Sbjct: 160 CHLCEKEFDTPSKLKVHMRKHT 181
>SB_14207| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0048)
Length = 233
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDL 343
CV C VLY +C H +C C R CP CR DL
Sbjct: 105 CVCCQDLVLYPVTTKCLHNICKGCLQR-SFKAEVFTCPYCRTDL 147
>SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 30.3 bits (65), Expect = 2.2
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +2
Query: 536 LLND-HMRRVHERFFCDLCVNHLKIFTNERRCYTRQELAHHRRKGDLDDTSHRGH-PL-C 706
++ND + ++V++ + C+LC K++T + L H R H G+ PL C
Sbjct: 529 MINDLNSKKVNKGYLCELCG---KLYTR------KYGLKIHMR-------IHTGYKPLKC 572
Query: 707 XFCEXRFMDPDELYRHLR 760
+C+ RF DP + +H+R
Sbjct: 573 KYCQKRFGDPSNMAKHIR 590
>SB_28587| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-25)
Length = 346
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 617 ERRCYTRQELAHHRRKGDLDDTSHRGHP--LCXFCEXRFMDPDELYRHLRR 763
+RR ELA H+R +H G C C RFM D L +H RR
Sbjct: 243 DRRFARSDELARHKR-------THTGEKRFACPLCGRRFMRSDHLTKHARR 286
>SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)
Length = 576
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +2
Query: 200 NENTCVVCFKNVLY-YSIGECDHPVCFECSTRMRVLCLQN--ECPICR 334
+E C VC + S+ C H VC EC ++ ECPICR
Sbjct: 18 DEGACPVCIEVFEEPKSLPSCAHNVCRECLEKITARNSSRFVECPICR 65
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 212 CVVCFKNVLYYSIG-ECDHPVCFECSTRMRVLCLQN--ECPICRKDLLRVVFTDSIHPYK 382
C + F+ + + G +C H CF+ + +R+ C + +CP+C + V D +K
Sbjct: 931 CPITFRRISLPARGHDCKHIQCFDLESYLRLNCERGSWKCPVCNSCEVEEVTIDPNSQWK 990
>SB_20350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 66 VVSGIYPRQILELPRTRNLIKHSVTETLLQNPR*TIQQSCLRLRRTRILA*FVSRTFCTT 245
+++ Y +++ P NLIKHS T L+++P + L T I+ S TT
Sbjct: 70 LINFFYATNLIKHPDATNLIKHSNTTNLIKHP----DATNLIKHPTTIITTHPSSKSTTT 125
Query: 246 QLASVTIPYVSS 281
+ ++T P +S
Sbjct: 126 GIITITHPDANS 137
>SB_9940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/81 (27%), Positives = 35/81 (43%)
Frame = +2
Query: 209 TCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRVVFTDSIHPYKEL 388
TC ++L I + F+ R+R+ L + + R F + +P L
Sbjct: 5 TCPEAIVDLLVVEIRFPVQSISFDTFLRLRLRLLALHATYKQYNSQRSTFYNQFNPI--L 62
Query: 389 GNRXIPXIDCLKDNTKLYSVL 451
R IP I ++ TKLY+VL
Sbjct: 63 STRSIPSIRSIRSITKLYNVL 83
>SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 212 CVVCFKNVLYY--SIGECDHPVCFECSTRMRVLCLQNECPICRKDL 343
C+ C + +L+Y I C H VC +C T++ L CP C +L
Sbjct: 431 CLDC-EGLLWYPVQIKPCGHRVCTKCYTKL--LSSSARCPGCMDEL 473
>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 587
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +2
Query: 596 HLKIFTNERRCYTRQELAHHRRKGDLDD---TSHRGHPL-CXFCEXRFMDPDELYRHLR 760
HLK+ T ER Q K L D T + P C CE +F P L +H+R
Sbjct: 465 HLKLHTGERPYQCTQCEKGFNAKSHLADHLRTHSQDRPFACNECEKKFKHPVSLNKHVR 523
>SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)
Length = 782
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -2
Query: 319 LILKTEHPHPSRALETYGMVTLAN*VVQNVLETNYASILV---RLSLRHDCCIVYLGFCK 149
++ K E P R + G T+A VV +Y S+ V ++ R D VY C
Sbjct: 597 VLFKAEDPKGERRILLNGDKTIA--VVPKEQCDDYLSVEVTSKKVGPRRDASTVYYP-CS 653
Query: 148 SVSVTECFIKLRVR 107
S ++ CF+ +R R
Sbjct: 654 SATMDSCFVLIRTR 667
>SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8)
Length = 815
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 229 LETNYASILVRLSLRHDCCIVYLGFCKSVSVTECFIKLRVR 107
L+ + + VR+ R D VY C S ++ CF+ +R R
Sbjct: 676 LQCSICHVAVRVGPRRDASTVYYP-CSSATMDSCFVLIRTR 715
>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +2
Query: 596 HLKIFTNER--RCYTRQELAHHRRKGDLDDTSHRGHP--LCXFCEXRFMDPDELYRHLR 760
H KI T E+ C ++ + K D +H G C CE F D D L H+R
Sbjct: 507 HKKIHTEEKPHECTQCEKAFITKAKLDRHFRTHSGEKPYRCEICEKSFRDKDSLNIHMR 565
>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 680 TSHRGHPLCXFCEXRFMDPDELYRHLR 760
T HR LC FCE F+ P ++HL+
Sbjct: 506 TKHRY--LCMFCEEVFLSPGVFHKHLK 530
>SB_39287| Best HMM Match : NHL (HMM E-Value=1.5e-21)
Length = 645
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +2
Query: 188 EAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQN-ECPICR 334
E E TC VC + + C H C EC + + N CP CR
Sbjct: 14 EKVREELTCSVCLEQFREPKMLPCFHTFCKECLEKTKQSFRGNLLCPTCR 63
>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
Length = 843
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 254 ECDHPVCFECSTRMRVLCLQ-NECPICRKDLLRVVFTDSIHPYKE 385
+C H C EC +++ L ECP C+ LR + T S+ K+
Sbjct: 350 DCSHTFCTECIMKIKELQGDVVECPTCK---LRTLLTSSVDCLKK 391
>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 907
Score = 25.0 bits (52), Expect(2) = 9.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 704 CXFCEXRFMDPDELYRHLRRS 766
C CE F+D +L RH +R+
Sbjct: 266 CDLCEKAFIDRADLRRHCQRT 286
Score = 21.4 bits (43), Expect(2) = 9.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2
Query: 587 CVNHLKIFTNER 622
C H++I TNER
Sbjct: 251 CSRHMRIHTNER 262
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,013,468
Number of Sequences: 59808
Number of extensions: 576800
Number of successful extensions: 1572
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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