Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_N04
(884 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 64 1e-10
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ... 60 1e-09
At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger) fa... 39 0.005
At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa... 36 0.027
At5g01450.1 68418.m00058 expressed protein 35 0.083
At2g38185.3 68415.m04691 zinc finger (C3HC4-type RING finger) fa... 35 0.083
At2g38185.2 68415.m04690 zinc finger (C3HC4-type RING finger) fa... 35 0.083
At2g38185.1 68415.m04689 zinc finger (C3HC4-type RING finger) fa... 35 0.083
At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger) fa... 34 0.14
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa... 34 0.14
At2g28840.1 68415.m03506 ankyrin repeat family protein contains ... 33 0.19
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa... 33 0.25
At3g58040.1 68416.m06470 seven in absentia (SINA) family protein... 33 0.25
At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger) fa... 33 0.25
At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) fa... 33 0.25
At2g41980.1 68415.m05193 seven in absentia (SINA) family protein... 33 0.25
At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger) fa... 33 0.33
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 33 0.33
At2g21380.1 68415.m02544 kinesin motor protein-related 33 0.33
At5g58787.1 68418.m07365 zinc finger (C3HC4-type RING finger) fa... 32 0.44
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa... 32 0.44
At5g04460.1 68418.m00443 expressed protein 32 0.44
At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finger) fa... 32 0.44
At2g24480.1 68415.m02925 zinc finger (C3HC4-type RING finger) fa... 32 0.58
At3g61790.1 68416.m06933 seven in absentia (SINA) family protein... 31 0.77
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 31 0.77
At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger) fa... 31 0.77
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 31 1.0
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 31 1.0
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin... 31 1.0
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 31 1.0
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 31 1.0
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa... 31 1.0
At2g25380.1 68415.m03039 zinc finger protein-related very low si... 31 1.0
At5g43200.1 68418.m05278 zinc finger (C3HC4-type RING finger) fa... 31 1.3
At3g45555.1 68416.m04920 zinc finger (C3HC4-type RING finger) fa... 31 1.3
At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger) fa... 31 1.3
At1g24440.1 68414.m03079 expressed protein similar to MTD2 [Medi... 31 1.3
At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger) fa... 30 1.8
At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger) fa... 30 1.8
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa... 30 1.8
At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) fa... 30 1.8
At1g59560.1 68414.m06698 expressed protein contains similarity t... 30 1.8
At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger) fa... 30 1.8
At4g11360.1 68417.m01832 zinc finger (C3HC4-type RING finger) fa... 30 2.3
At4g10940.1 68417.m01779 PHD finger family protein contains Pfam... 30 2.3
At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING ... 30 2.3
At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING ... 30 2.3
At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger) fa... 30 2.3
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 30 2.3
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 30 2.3
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 30 2.3
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 30 2.3
At4g35840.1 68417.m05091 zinc finger (C3HC4-type RING finger) fa... 29 3.1
At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger) fa... 29 3.1
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa... 29 3.1
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ... 29 3.1
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 29 3.1
At4g27880.1 68417.m04002 seven in absentia (SINA) family protein... 29 4.1
At3g47160.1 68416.m05120 expressed protein similar to MTD2 [Medi... 29 4.1
At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger) fa... 29 4.1
At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger) fa... 29 4.1
At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger) fa... 29 5.4
At3g59130.1 68416.m06592 DC1 domain-containing protein contains ... 29 5.4
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ... 29 5.4
At3g58720.1 68416.m06545 zinc finger (C3HC4-type RING finger) fa... 29 5.4
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 29 5.4
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 29 5.4
At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger) fa... 29 5.4
At2g17730.1 68415.m02054 zinc finger (C3HC4-type RING finger) fa... 29 5.4
At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger) fa... 29 5.4
At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger) fa... 29 5.4
At1g30860.1 68414.m03774 expressed protein 29 5.4
At5g51390.1 68418.m06371 expressed protein similar to unknown pr... 28 7.2
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 28 7.2
At3g50010.1 68416.m05468 DC1 domain-containing protein contains ... 28 7.2
At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger) fa... 28 7.2
At3g45560.1 68416.m04921 zinc finger (C3HC4-type RING finger) fa... 28 7.2
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 28 7.2
At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger) fa... 28 7.2
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 28 7.2
At2g16440.1 68415.m01883 DNA replication licensing factor, putat... 28 9.5
At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa... 28 9.5
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 64.1 bits (149), Expect = 1e-10
Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 31/216 (14%)
Frame = +2
Query: 203 ENTCVVCFKNVLYYSIGECDH-PVCFECSTRMRVL------CL-QNECPI-----CRKDL 343
+++C VC N+ + + G C H VC C R+R + C+ + E PI D
Sbjct: 2 DDSCAVCADNLEWVAYGSCGHREVCSTCVVRLRFVLDDPRCCICKTESPIVFVTKALGDY 61
Query: 344 LRVVFTDSIHPYKELGNRX-----IPXIDCLKDNTKLYSVLKT*-KMHMKTCWRIGVK-- 499
R + S P R D+ Y ++K ++ C + K
Sbjct: 62 TRTINDFSTFPSAPREGRVGAFWYHEDTQAFFDDLDQYRMIKAMCRLSCGVCDKTEDKPR 121
Query: 500 -SVIRYHRSA--TLXLLNDHMRRVHERFFCDLCVNHLKIFTNERRCYTRQELAHHRRKGD 670
R+HR ++ L H+ H+ C LC+ KIF E++ YTR +L H + GD
Sbjct: 122 EGGPRHHRQRIKSVEQLKGHLYHKHKLHMCGLCLEGRKIFICEQKLYTRAQLNQHIQTGD 181
Query: 671 LD---DTSHR----GHPLCXFCEXRFMDPDELYRHL 757
+ S R GHP+C FC F +ELY H+
Sbjct: 182 SEVDGSESERGGFAGHPMCEFCRNPFYGDNELYTHM 217
>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type, domain
Length = 745
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Frame = +2
Query: 539 LNDHMRRVHERFFCDLCVNHLKIFTNERRCYTRQELAHHRRKGDLD---DTSHR----GH 697
L DH+ H+ C LC+ K+F E++ +T+ +L H GD + S R GH
Sbjct: 138 LKDHLNHQHKLHMCSLCLVGRKVFICEQKLFTKGQLNQHISSGDSEVDGSESERGGFTGH 197
Query: 698 PLCXFCEXRFMDPDELYRHLRRS--TCTV 778
P+C FC+ F +ELY H+ R TC +
Sbjct: 198 PMCEFCKRPFYGDNELYTHMSREHYTCHI 226
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 203 ENTCVVCFKNVLYYSIGECDH-PVCFECSTRMRVLCLQNECPICRKDLLRVVFTDSIHPY 379
+++C VC +N+ + G C H VC C R+R + C IC+ + V T ++ Y
Sbjct: 2 DDSCAVCAENLEWVGYGSCGHREVCSTCVVRLRFILNDRRCCICKTECPVVFVTKALGDY 61
>At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 872
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 197 ANENTCVVCFKNVLYYSIGECDHPV-CFECSTRMRVLCLQNECPICRKDLLRV 352
+N++ C +CF C H V C++C T+++ + CPICRK ++ V
Sbjct: 816 SNKSLCAICFDAPRDCCFLPCGHCVSCYQCGTKIKRT--KGRCPICRKKIMHV 866
Score = 34.7 bits (76), Expect = 0.083
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECDHPV-CFECSTRMRVLCLQNECPICRKDLLRV 352
C +CF C H V C+EC T M+ CPICR+ + +V
Sbjct: 391 CAICFDVPRDCFFLPCGHSVSCYECGTTMQEA--DGSCPICRRKMKKV 436
>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 1280
Score = 36.3 bits (80), Expect = 0.027
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 203 ENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRVV 355
+NTC +C+ I C H C+ C TR + C C C ++ V+
Sbjct: 1214 DNTCCICYAGEANAMIAPCSHRSCYGCITRHLLNC--QRCFFCNATVIDVI 1262
>At5g01450.1 68418.m00058 expressed protein
Length = 444
Score = 34.7 bits (76), Expect = 0.083
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 212 CVVCF---KNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRV 352
C +C+ ++ + S G C CF+C TR+ CP+CRK + +V
Sbjct: 393 CAICYDAPRDCFFLSCGHC--VACFQCGTRIAET--SGFCPVCRKKIRKV 438
>At2g38185.3 68415.m04691 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 346
Score = 34.7 bits (76), Expect = 0.083
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECDHPV-CFECSTRMRVLCLQNECPICRKDLLRV 352
C +CF C H V C+EC T M+ CPICR+ + +V
Sbjct: 295 CAICFDVPRDCFFLPCGHSVSCYECGTTMQEA--DGSCPICRRKMKKV 340
>At2g38185.2 68415.m04690 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 441
Score = 34.7 bits (76), Expect = 0.083
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECDHPV-CFECSTRMRVLCLQNECPICRKDLLRV 352
C +CF C H V C+EC T M+ CPICR+ + +V
Sbjct: 390 CAICFDVPRDCFFLPCGHSVSCYECGTTMQEA--DGSCPICRRKMKKV 435
>At2g38185.1 68415.m04689 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 441
Score = 34.7 bits (76), Expect = 0.083
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECDHPV-CFECSTRMRVLCLQNECPICRKDLLRV 352
C +CF C H V C+EC T M+ CPICR+ + +V
Sbjct: 390 CAICFDVPRDCFFLPCGHSVSCYECGTTMQEA--DGSCPICRRKMKKV 435
>At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 346
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Frame = +2
Query: 176 TIMSEAQ-ANENTCVVCFKNVL----YYSIGECDHPVCFECSTR-MRVLCLQNECPIC 331
T++SE TC +CF NVL +S+ C H C EC + V L+ P C
Sbjct: 142 TVVSEISICMPATCSICFNNVLEAEKMFSVAICGHQFCVECVKHYIEVKLLEGGVPRC 199
>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 401
Score = 33.9 bits (74), Expect = 0.14
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +2
Query: 164 INNTTIMSEAQANENTCVVCFKN-VLYYSIGE--CDHPVCFECSTRMRVLCLQNECPICR 334
I+ T ++S++Q++ C VC +N VL S E C+H +C + L ++N CP+CR
Sbjct: 188 IDPTHLLSDSQSH---CAVCKENFVLKSSAREMPCNHIYHPDCI--LPWLAIRNSCPVCR 242
Query: 335 KDLLRVVFTD 364
+L TD
Sbjct: 243 HELPAEDLTD 252
>At2g28840.1 68415.m03506 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 456
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 182 MSEAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNE 319
MSE E C +CF+ V + +C H +C +C+ LC N+
Sbjct: 310 MSEVSDTE-LCCICFEQVCTIEVKDCGHQMCAQCTL---ALCCHNK 351
>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 655
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +2
Query: 212 CVVCFKNVL---YYSIGECDHPVCFEC-STRMRVLCLQNECPICRKD 340
C +CF +++ +S+ +C H CF+C + V L P C D
Sbjct: 301 CAICFNDIVAEGMFSVDKCRHRFCFQCVKQHVEVKLLHGMAPKCPHD 347
>At3g58040.1 68416.m06470 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 308
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECD--HPVCFECSTRMRVLCLQNECPICRKDL 343
C VC N++Y I +C H +C C R+ QN CP CR +L
Sbjct: 60 CPVC-TNLMYPPIHQCPNGHTLCSNCKLRV-----QNTCPTCRYEL 99
>At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 299
Score = 33.1 bits (72), Expect = 0.25
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +2
Query: 164 INNTTIMSEAQANEN--TCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQ-NECPICR 334
I NT + ANE CV+C ++ C H +C CS ++L Q N CPICR
Sbjct: 225 IGNTVDDNGEDANERGKECVICLSEPRDTTVLPCRH-MCM-CSGCAKLLRFQTNLCPICR 282
Query: 335 KDLLRVV 355
+ + R++
Sbjct: 283 QPVDRLL 289
>At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 359
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECDHP-VCFECSTRMRVLCLQNECPICRKDL 343
CV+C ++ C H +C +C+ +R+ N+CPICR+ +
Sbjct: 302 CVICMTEAKDTAVLPCRHLCMCSDCAKELRLQ--SNKCPICRQPI 344
>At2g41980.1 68415.m05193 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 305
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECD--HPVCFECSTRMRVLCLQNECPICRKDL 343
C VC N++Y I +C H +C C R+ QN CP CR +L
Sbjct: 57 CPVC-TNLMYPPIHQCPNGHTLCSSCKLRV-----QNTCPTCRYEL 96
>At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHA2b [Arabidopsis thaliana] GI:3790571; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 211
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +2
Query: 188 EAQANENTCVVCFKNVL----YYSIGECDHPVCFECSTRMRVLCLQNECPICRK 337
E + TC +C +N+L Y + C H C T + N CP+CRK
Sbjct: 152 EEEEESKTCAICLENLLRSEDYCEMPTCSHYFHEPCLTEW-LTRDNNSCPLCRK 204
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQ-NECPICRKDLLRVV 355
CV+C ++ C H +C CS +VL Q N CPICR+ + R++
Sbjct: 319 CVICLSEPRDTTVLPCRH-MCM-CSGCAKVLRFQTNRCPICRQPVERLL 365
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 185 SEAQANENTCVVCFKNVLYYSIGECDH-PVCFECSTRMRVLCLQNECPICR 334
+ A AN + C VCF++ + C H +C CS + C +ECPICR
Sbjct: 1002 ANADANSHICKVCFESPTATILLPCRHFCLCKSCS----LAC--SECPICR 1046
>At5g58787.1 68418.m07365 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 242
Score = 32.3 bits (70), Expect = 0.44
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 182 MSEAQAN-ENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRV 352
MSE + E C +C + + C H +C +C R CP CR L RV
Sbjct: 133 MSEIEIEREEECGICMEMNSKVVLPNCTHSLCIKCYRDWR--GRSQSCPFCRDSLKRV 188
>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 32.3 bits (70), Expect = 0.44
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECDHP-VCFECSTRMRVLCLQNECPICRKDLLRVV 355
CV+C ++ C H +C +C+ +R N+CPICR+ + +V
Sbjct: 321 CVICLTEPKDTAVMPCRHLCLCSDCAEELRFQT--NKCPICRQPIHELV 367
>At5g04460.1 68418.m00443 expressed protein
Length = 863
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 191 AQANENTCVVCFKNVLYYSIGECDHP-VCFECSTRMRVLCLQNECPICRKDLLRVVFTDS 367
+ ++ TC VC N + + C H C +C+ + + +CP+CR ++ V+ S
Sbjct: 804 SHVSKGTCCVCCDNHIDALLYRCGHMCTCSKCANEL--VRNGGKCPLCRAPIIEVIRAYS 861
Query: 368 I 370
I
Sbjct: 862 I 862
>At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 242
Score = 32.3 bits (70), Expect = 0.44
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +2
Query: 182 MSEAQAN-ENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRV 352
MSE E C +C + + C+H +C C R CP CR L RV
Sbjct: 135 MSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWR--ARSQSCPFCRGSLKRV 190
>At2g24480.1 68415.m02925 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHY1a [Arabidopsis thaliana] GI:3790593; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 198
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Frame = +2
Query: 188 EAQANENTCVVCFKNVLYYSIGECDHPVCFEC----STRMRVLCLQNECPICRK 337
+ + TC +C +N + S C P C C V+ N CP+CRK
Sbjct: 142 DQEEESETCAICLEN-MSRSENYCQMPYCKHCYHEGCVTKWVIGHNNSCPLCRK 194
>At3g61790.1 68416.m06933 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 326
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECD--HPVCFECSTRMRVLCLQNECPICRKDL 343
C VC N +Y I +C H +C C R+ N CP CR++L
Sbjct: 63 CPVC-TNSMYPPIHQCHNGHTLCSTCKARVH-----NRCPTCRQEL 102
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICR 334
C +C N + G C H C EC ++V CPICR
Sbjct: 446 CPICLSNPKNMAFG-CGHQTCCECGPDLKV------CPICR 479
>At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 260
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = +2
Query: 203 ENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRV 352
E C +C + + C H +C +C + CP CR + RV
Sbjct: 159 EEECGICLETCTKMVLPNCCHSMCIKCYRNWNL--KSQSCPFCRGSMKRV 206
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 31.1 bits (67), Expect = 1.0
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 4/175 (2%)
Frame = +2
Query: 47 VLTSRCSSKWYLSKTNS*ASTYSQFNKTLGYRNAFTES*INNTTIMSEAQANENTCVVCF 226
++ SR S+ Y + +S A + N +NA + + I I N C +C
Sbjct: 987 LVMSRADSQQY-ADLDSLARRFLDNNPDSVSQNAPSRAYIEEV-IQDLRDGNSKECPICL 1044
Query: 227 KNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRVVF----TDSIHPYKELGN 394
++ + C H +C EC CPICR L R TDSI
Sbjct: 1045 ESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPICRTILKRTELISCPTDSIF------- 1097
Query: 395 RXIPXIDCLKDNTKLYSVLKT*KMHMKTCWRIGVKSVIRYHRSATLXLLNDHMRR 559
+ + K+++K+ +LK + K+ G KS++ ++ L LL +RR
Sbjct: 1098 -RVDVVKNWKESSKVSELLKCLEKIKKS--GSGEKSIVFSQWTSFLDLLEIPLRR 1149
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 185 SEAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRVV 355
+E ++ C +C + +I C H +C CST + + CP CR + R +
Sbjct: 4651 AETAKSQWLCQICQTKEVEVTIVPCGHVLCRHCSTSV------SRCPFCRLQVNRTI 4701
>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
motor protein - Ustilago maydis, PID:g2062750; identical
to cDNA MKRP2 mRNA for kinesin-related protein
GI:16902293, kinesin-related protein [Arabidopsis
thaliana] GI:16902294
Length = 1055
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 185 SEAQANENTCVVCFKNVLYYSIGECDH-PVCFECSTRMRVLCLQNECPICR 334
+ AN + C VCF++ + C H +C CS + C +ECPICR
Sbjct: 999 ANGDANSHICKVCFESPTAAILLPCRHFCLCKSCS----LAC--SECPICR 1043
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/61 (21%), Positives = 26/61 (42%)
Frame = +2
Query: 173 TTIMSEAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRV 352
T + N++ C VC + C H C CS + + + CP+C + ++ +
Sbjct: 153 TASIGTLTGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWL--NRGSCPLCNRPIIEI 210
Query: 353 V 355
+
Sbjct: 211 L 211
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +2
Query: 164 INNTTIMSEAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICR 334
+ N E ++ C VC + + + C H CF C + ++ CPICR
Sbjct: 10 MKNDESQEEEIPDQFLCCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHCPICR 66
>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 360
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +2
Query: 203 ENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLL 346
E +C VC + S C H C CS + + + CP+C +L
Sbjct: 309 ELSCCVCMVKIKGASFTPCGHTFCKLCSKEL--MAQKGHCPVCSSFVL 354
>At2g25380.1 68415.m03039 zinc finger protein-related very low
similarity to SP|O95376 Ariadne-2 protein homolog
(ARI-2) (Triad1 protein) {Homo sapiens}; contains Pfam
profile PF01485: IBR (In Between Ring fingers) domain
Length = 350
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 137 YRNAFTES*INNTTIMSEAQANENTCVVCFKNVL---YYSIGECDHPVCFECSTRMRVLC 307
YR A E ++ ++ ++ +A TCV+C + + + +C H CF C + V C
Sbjct: 176 YRLA-REEIVSKSSSVNVKEAQGETCVICLEETVADRMFFTDKCLHRYCFSCVKQTCVKC 234
Query: 308 LQNECPICR 334
C C+
Sbjct: 235 NGLFCIDCK 243
>At5g43200.1 68418.m05278 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHY1a [Arabidopsis thaliana] GI:3790593; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 207
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 182 MSEAQANEN-TCVVCFKNVL----YYSIGECDHPVCFECSTRMRVLCLQNECPICRK 337
MS+ + E+ TC +C + + Y + C H C T+ + N CP+CRK
Sbjct: 145 MSQGEEEESKTCAICLEELSTSDDYCELPNCTHCFHEPCLTQWLIRG-NNSCPLCRK 200
>At3g45555.1 68416.m04920 zinc finger (C3HC4-type RING finger)
family protein low similarity to UbcM4-interacting
protein 4 [Mus musculus] GI:13991706; contains Pfam
profiles PF00097: Zinc finger C3HC4 type (RING finger),
PF01485: IBR (In Between Ring fingers) domain
Length = 213
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = +2
Query: 209 TCVVCF----KNVLYYSIGECDHPVCFECSTR-MRVLCLQNECPIC 331
TC +CF K+ Y + C+H C EC R + V L+ IC
Sbjct: 16 TCSICFNDDFKSEQMYYVALCNHKFCLECMKRYIEVRLLEGTVLIC 61
>At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHG1a
GI:3822225 from [Arabidopsis thaliana]; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 494
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 212 CVVC---FKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLL 346
C +C FKN + +C H EC + L ++N CPIC+ + L
Sbjct: 442 CTICQESFKNEEKIATLDCGHEYHAECLEKW--LIVKNVCPICKSEAL 487
>At1g24440.1 68414.m03079 expressed protein similar to MTD2
[Medicago truncatula] GI:9294812
Length = 251
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = +2
Query: 203 ENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRV 352
E+ C +C + + C H +C +C CP CR + RV
Sbjct: 152 EDECGICLEPCTKMVLPNCCHAMCIKCYRNWNT--KSESCPFCRGSIKRV 199
>At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger)
family protein contains similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 486
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 245 SIGECDHPVCFECSTRMRVLCLQNECPICRK 337
++ EC H C EC + L NECP CRK
Sbjct: 148 TVMECLHRFCRECIDKSMRLG-NNECPACRK 177
>At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 262
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +2
Query: 179 IMSEAQANENTCVVCFKNVLYYSIGECDHPVCFECSTR---MRVLCLQNECPICRKDLLR 349
I SE+ ++ C +CF + G C H C C + + +CP+C + + +
Sbjct: 63 IESESPPEDDVCPICFGSFTVPCRGNCGHWYCGNCILQYWNYAAISRPCKCPMCVRHITK 122
Query: 350 VVFTDSIHPYKE 385
+ S+ +E
Sbjct: 123 LSPEPSLQERQE 134
>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 408
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +2
Query: 200 NENTCVVC----FKNVLYYSIGECDHPVCFECSTR-MRVLCLQNECPIC 331
++ TC +C F+ L +S+ C H C EC R + V L P C
Sbjct: 169 HDKTCSICSDDNFEPELMFSVALCGHEFCVECVKRHIEVRLLAGGVPRC 217
>At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 250
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 197 ANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRVV 355
A E +C VC + C H C CS + V + CP+C +L V+
Sbjct: 197 AAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWV--QRGNCPLCNTTILEVL 247
>At1g59560.1 68414.m06698 expressed protein contains similarity to
apoptosis inhibitors
Length = 338
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECDHP-VCFECSTRMRVLCLQNECPICRKDLLRVV 355
CVVC + EC H C CS ++R CP+CR+ + +V+
Sbjct: 291 CVVCLDQKYNTAFVECGHMCCCTPCSLQLRT------CPLCRERIQQVL 333
>At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger)
family protein low similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 427
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 245 SIGECDHPVCFECSTRMRVLCLQNECPICRK 337
++ EC H C EC + L NECP CRK
Sbjct: 115 TVMECLHRFCRECIDKSMRLG-NNECPTCRK 144
>At4g11360.1 68417.m01832 zinc finger (C3HC4-type RING finger)
family protein (RHA1b) identical to RING-H2 finger
protein RHA1b [Arabidopsis thaliana] GI:3790567
Length = 157
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Frame = +2
Query: 203 ENTCVVCFKNVL----YYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLL 346
E+ C VC + + + +C H C R V C + CPICR L
Sbjct: 82 EDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCPICRNRFL 133
>At4g10940.1 68417.m01779 PHD finger family protein contains Pfam
profile: PF00097 zinc finger, C3HC4 type
Length = 192
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGEC-DHPVCFECSTRMRVLCLQNECPICRKD 340
C +C ++ + +C H CFEC + N CP+C+++
Sbjct: 31 CGICMDIIIDRGVLDCCQHWFCFECIDNWST--IMNLCPLCQRE 72
>At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 18/66 (27%)
Frame = +2
Query: 194 QANENTCVVCFKNVL---------YYSIGECDHPVCFECSTRMR---------VLCLQNE 319
Q+ + C VC +L + + ECDHP C +C R V
Sbjct: 164 QSQDIECSVCLDRILSKATPGERKFGLLTECDHPFCIQCIRNWRSSAPVSGMDVNSTLRA 223
Query: 320 CPICRK 337
CPICRK
Sbjct: 224 CPICRK 229
>At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 18/66 (27%)
Frame = +2
Query: 194 QANENTCVVCFKNVL---------YYSIGECDHPVCFECSTRMR---------VLCLQNE 319
Q+ + C VC +L + + ECDHP C +C R V
Sbjct: 164 QSQDIECSVCLDRILSKATPGERKFGLLTECDHPFCIQCIRNWRSSAPVSGMDVNSTLRA 223
Query: 320 CPICRK 337
CPICRK
Sbjct: 224 CPICRK 229
>At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 182
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Frame = +2
Query: 209 TCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICR-----KDLLRV 352
+C +C +C H C +C L LQ +CP CR KDL+RV
Sbjct: 126 SCPICLCPFTQEVSTKCGHIFCKKCIKN--ALSLQAKCPTCRKKITVKDLIRV 176
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 194 QANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICR 334
++++ C VC K + + C H C C + + N+CP+CR
Sbjct: 190 RSDDFDCTVCLKLLYEPATTPCGHTFCRSC--LFQSMDRGNKCPLCR 234
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 194 QANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICR 334
++++ C VC K + + C H C C + + N+CP+CR
Sbjct: 190 RSDDFDCTVCLKLLYEPATTPCGHTFCRSC--LFQSMDRGNKCPLCR 234
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 194 QANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICR 334
++++ C VC K + + C H C C + + N+CP+CR
Sbjct: 190 RSDDFDCTVCLKLLYEPATTPCGHTFCRSC--LFQSMDRGNKCPLCR 234
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 194 QANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICR 334
++++ C VC K + + C H C C + + N+CP+CR
Sbjct: 190 RSDDFDCTVCLKLLYEPATTPCGHTFCRSC--LFQSMDRGNKCPLCR 234
>At4g35840.1 68417.m05091 zinc finger (C3HC4-type RING finger)
family protein contains a TG non-consensus donor splice
site at exon 2; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 188 EAQANENTCVVCFKNV----LYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDL 343
+A N+++C VC ++ S+ C H C L CP+CR+DL
Sbjct: 183 DASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNW--LFRHGSCPMCRRDL 236
>At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 243
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Frame = +2
Query: 167 NNTTIMSEAQANENTCV---VCFKNVLYYSIGECDHPVCFECSTRMRVLCL--------Q 313
N TT + QANE+ C +C + C H C+ C + + L Q
Sbjct: 26 NLTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQ 85
Query: 314 NECPICRKDL 343
N CP+C+ ++
Sbjct: 86 NNCPVCKSNI 95
>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
family protein similar to C-terminal zinc-finger
[Glycine max] GI:558543; contains Pfam profile: PF00097
zinc finger, C3HC4 type (RING finger)
Length = 486
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 206 NTCVVC---FKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLL 346
++C +C +KN + +C H EC + L ++N CPIC+ + L
Sbjct: 426 DSCTICQENYKNEDKIATLDCMHKYHAECLKKW--LVIKNVCPICKSEAL 473
>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 661
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 182 MSEAQANENTCVVCFKNVLYY---SIGECDHPVCFECST 289
+ Q E TC +C + + + ECD+ +CF+C+T
Sbjct: 499 LDRQQELEATCQICQQKATFLRKLNCIECDYVICFKCAT 537
>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 137
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 164 INNTTIMSEAQANENTCVVCFKNVLYYSIGECDHPVCFECSTR-MRVLCLQNECPICR 334
IN T + +N C +C + + C H C+ C + + N CP+C+
Sbjct: 3 INTITNEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCK 60
>At4g27880.1 68417.m04002 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 327
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECD--HPVCFECSTRMRVLCLQNECPICRKDL 343
C VC + +Y I +C H +C C R+ N CP CR++L
Sbjct: 64 CPVCTYS-MYPPIHQCHNGHTLCSTCKVRVH-----NRCPTCRQEL 103
>At3g47160.1 68416.m05120 expressed protein similar to MTD2
[Medicago truncatula] GI:9294812; supporting cDNA
gi|25083983|gb|BT002136.1|
Length = 245
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +2
Query: 203 ENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRV 352
E C +C + + C H +C +C CP CR L RV
Sbjct: 144 EEECGICMEMNNMVVLPNCTHSLCIKCYRDWH--GRSESCPFCRDSLKRV 191
>At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +2
Query: 212 CVVCFKNV-LYYSIGECDHPVC---FECSTRMRVLCLQNECPICRKDL 343
CV+C + L + I +C C F R + ++ ECP CR+ L
Sbjct: 509 CVICMTTIDLRHRINDCMVTPCEHIFHSGCLQRWMDIKMECPTCRRPL 556
>At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +2
Query: 212 CVVCFKNV-LYYSIGECDHPVC---FECSTRMRVLCLQNECPICRKDL 343
CV+C + L + I +C C F R + ++ ECP CR+ L
Sbjct: 509 CVICMTTIDLRHRINDCMVTPCEHIFHSGCLQRWMDIKMECPTCRRPL 556
>At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518 and a IBR domain,
Pfam:PF01485
Length = 316
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +2
Query: 188 EAQANENTCVVCFKNVLY---YSIGECDHPVCFECSTRMRVLCLQNECPI 328
E TC VC+++V + + C H CF+C + + L+ P+
Sbjct: 149 EGDVYMETCPVCYEHVTSDEKFEVPGCFHRFCFDCIKKQADVALEFAKPV 198
>At3g59130.1 68416.m06592 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 329
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 197 ANENTCVVCFKNV-LYYSIGECDHPVCF 277
A ++C VC+KNV + Y C+H CF
Sbjct: 105 AKVSSCRVCYKNVDIKYGQYSCNHEECF 132
>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 602
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 185 SEAQANENTCVVCFKNVLYYSI--GECDHPVCFECST 289
S ++ NE C C K V Y + C+ +C+EC+T
Sbjct: 444 SYSEENEALCQGCKKRVYNYHLHCSLCEFVLCYECAT 480
>At3g58720.1 68416.m06545 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 238
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Frame = +2
Query: 128 TLGYRNAFTES*INNTTIMSEAQANENTCVVC---FKNVLYYSIGECDHPVCFECSTRMR 298
+L YRN S + T + ++ C VC F+ + C H EC
Sbjct: 116 SLYYRNKNPGSESSRNTQNLSGEEDDKRCSVCLEDFEPKETVMLTPCKHMFHEECIVPW- 174
Query: 299 VLCLQNECPICRKDLLRVVFTDSIHP 376
L + +CP+CR +L+ DS P
Sbjct: 175 -LKTKGQCPVCRFVILKPTKQDSSPP 199
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 200 NENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRK 337
+E +C +C + S C H C +C C +CP CR+
Sbjct: 720 DELSCAICLEICFEPSTTTCGHSFCKKCLRSAADKC-GRKCPKCRQ 764
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Frame = +2
Query: 209 TCVVCFKNVLYYSIGECDHPVCFECS-TRMRVLCLQ--------NECPICRKDLLRVVFT 361
TC +C + V +C H C C+ + VL Q ++CPICR+ V+
Sbjct: 230 TCAICLETVFNPYALKCGHIFCNSCACSAASVLIFQGIKAAPRHSKCPICRE---AGVYA 286
Query: 362 DSIH 373
+++H
Sbjct: 287 EAVH 290
>At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF01485:IBR domain
Length = 384
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +2
Query: 203 ENTCVVCFKN-----VLYYSIGECDHPVCFECSTR-MRVLCLQNECPIC 331
+ TC +CF + +++Y I +C H C EC R + V LQ C
Sbjct: 150 KKTCTICFDDDINADMMFY-IDQCGHMFCSECVKRHIEVSLLQGSLITC 197
>At2g17730.1 68415.m02054 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger) domain; similar to RING-H2 finger
protein RHA3a (GI:3790573) [Arabidopsis thaliana];
similar to ReMembR-H2 protein JR700 (GI:6942147)
[Arabidopsis thaliana]
Length = 241
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = +2
Query: 167 NNTTIMSEAQANENTCVVCFKNV----LYYSIGECDHPVCFECSTRMRVLCLQNECPICR 334
NN T SE N ++C VC ++ S+ C H C L CP+CR
Sbjct: 184 NNNTDASE---NTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNW--LLRHGSCPMCR 238
Query: 335 KDL 343
+D+
Sbjct: 239 RDI 241
>At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 281
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +2
Query: 188 EAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICR 334
E +N+ TC++C + + C H C L QN CP CR
Sbjct: 105 ELSSNDATCIICREEMTSAKKLVCGHLFHVHCLRSW--LERQNTCPTCR 151
>At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 389
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +2
Query: 188 EAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICR 334
E +N+ TC++C + + C H C L QN CP CR
Sbjct: 213 ELSSNDATCIICREEMTSAKKLVCGHLFHVHCLRSW--LERQNTCPTCR 259
>At1g30860.1 68414.m03774 expressed protein
Length = 730
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECDHP-VCFECSTRMRVLCLQNECPICRKDLLRVV 355
C VC + + + C H +C +C+ + +CPICR ++ VV
Sbjct: 676 CCVCDETQVEAVLYRCGHMCMCLKCANELH--WSGGKCPICRAQIVDVV 722
>At5g51390.1 68418.m06371 expressed protein similar to unknown
protein (gb|AAB68039.1)
Length = 113
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 500 SVIRYHRSATLXLLNDHMRRVHERFFCDLCVNHLKIFTNERR 625
+V+R +RS RR RFFC C + LK+F + R
Sbjct: 71 TVMRAYRSNEAMKSIQDTRRRQRRFFCFECFDFLKLFFSRDR 112
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 182 MSEAQANENTCVVCFKNVLYY---SIGECDHPVCFECST 289
+ Q + TC +C + + + + ECD+ +CF C+T
Sbjct: 491 LDRQQERKATCQICQRKIAFLRKLNCIECDYVLCFICAT 529
>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 769
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Frame = +2
Query: 179 IMSEAQANENTCVVCFKN------VLYYSIGECDHPVCFECST 289
+ S+ + C VC K+ + I ECD +CFEC+T
Sbjct: 595 LTSKPDEEQRKCSVCKKSGHCPTKETFNCIEECDFALCFECAT 637
>At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 210
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +2
Query: 164 INNTTIMSEAQANE-NTCVVCF----KNVLYYSIGECDHPVCFECSTRMRVLCLQNECPI 328
+N +T + NE + CVVC + + CDHP EC T+ L + CPI
Sbjct: 145 LNASTYVFSHNKNEIDRCVVCQMEFEERESLVVLRPCDHPYHSECITKW--LETKKICPI 202
Query: 329 C 331
C
Sbjct: 203 C 203
>At3g45560.1 68416.m04921 zinc finger (C3HC4-type RING finger)
family protein contains Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 503
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +2
Query: 191 AQANENTCVVCFKNVL----YYSIGECDHPVCFECSTR 292
A + TC +CF + +S+ C H C EC T+
Sbjct: 148 APSQRKTCGICFNDDFKAEHMFSVDLCGHQFCVECMTQ 185
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +2
Query: 173 TTIMSEAQANENTCVVC---FKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDL 343
T ++S+ C +C FK+ +I EC H C C + N CP+C +L
Sbjct: 3 TKVLSKEVKPCLACPICTNPFKDAT--TISECLHTFCRSCIRNKFINERVNACPVCNVNL 60
>At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 425
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/44 (22%), Positives = 19/44 (43%)
Frame = +2
Query: 212 CVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDL 343
C +C + C H C+ C + + ECP+C+ ++
Sbjct: 141 CYICLDLSKDPVVTNCGHLYCWSCLYQWLQVSEAKECPVCKGEV 184
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +2
Query: 194 QANENTCVVCFKNVLYYSIGECDHPVCFECSTR-MRVLCLQNECPICR 334
Q + C +CF+ + C H C+ C R + ECP+C+
Sbjct: 22 QGGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCK 69
>At2g16440.1 68415.m01883 DNA replication licensing factor, putative
similar to SP|P49717 DNA replication licensing factor
MCM4 (CDC21 homolog) {Mus musculus}, SP|P29458 Cdc21
protein {Schizosaccharomyces pombe}; contains Pfam
profile PF00493: MCM2/3/5 family
Length = 847
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +2
Query: 164 INNTTIMSEAQANENTCVVC--FKNVLYYSIGECDHP-VCF--ECSTRMRVLCLQNECPI 328
I +++I+ E + C+VC F + + G+ P C EC T+ + + N C
Sbjct: 255 IRSSSIIPEIREAVFRCLVCGYFSDPIIVDRGKISEPPTCLKQECMTKNSMTLVHNRCRF 314
Query: 329 CRKDLLRV 352
K ++R+
Sbjct: 315 ADKQIVRL 322
>At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = +2
Query: 200 NENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRVV 355
N+ C VC + C H C CS + + CP+C + + V+
Sbjct: 152 NDPLCCVCMGREKGAAFIPCGHTYCRVCS--REIWMNRGTCPLCNRSIFDVL 201
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,352,606
Number of Sequences: 28952
Number of extensions: 377586
Number of successful extensions: 1137
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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