Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N03
         (952 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)                 29   4.2  
SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  
SB_199| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   7.3  
SB_16220| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
          Length = 1750

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +1

Query: 85   KVLFVFVCLLWQLSVTSPDNIFQRENARKVNIRFCIALKW 204
            ++L +  CLL +++  +   I+Q    R  ++R C+ ++W
Sbjct: 1573 RMLMIIECLLARVAWVTLKGIYQAAQRRGTSLRICLRVRW 1612


>SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 225 PEVHDFVDYVGPCDVPQCFCDRP 293
           PE+ D  D  GPC VP  F D P
Sbjct: 10  PEIQDNPDGWGPCSVPTAFKDIP 32


>SB_199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 149 KMLSGDVTDSCHNKQTNTNKTXHCQRALSQ 60
           KM   DVT  CH K +  + T  C   +SQ
Sbjct: 26  KMSRQDVTTRCHAKMSQQDVTARCHNTISQ 55


>SB_16220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 105 LFVVAAVGYVTGQHFPTRKCPKGEH 179
           LF +A + ++TG H  TRK P GEH
Sbjct: 354 LFAMATLYFLTGYHLWTRK-PPGEH 377


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,630,036
Number of Sequences: 59808
Number of extensions: 275174
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2788625034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)