Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N03
         (952 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical p...    38   0.008
Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical pr...    34   0.13 
U42830-3|AAC48275.1|  195|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical pr...    30   2.8  
Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical p...    28   8.5  
AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    28   8.5  

>U50311-12|AAA92315.1|  169|Caenorhabditis elegans Hypothetical
           protein C25E10.10 protein.
          Length = 169

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +3

Query: 150 PTRKCP-KGEHSVLYCPQMAEPDC--ENPEVHDFVDYVGPCDVPQCFCDRPNVRNTKTGK 320
           P RK   +G+  +  C    EP C  ENPE  D V     C    C C +  VR++ TGK
Sbjct: 71  PIRKPECEGDEELKACGSACEPTCDNENPEC-DLV-----CMTNVCQCKKGLVRDSATGK 124

Query: 321 CVPESEC 341
           CV +++C
Sbjct: 125 CVEKNKC 131


>Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical
           protein M02G9.2 protein.
          Length = 398

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = +3

Query: 87  SFICICLFVVAAVGYVTGQHFPTR-KCPKGEHSVLYCPQMAEPDCENPEVHDFVDYVGPC 263
           S+I +  FV+A+V  +  +       C  GE     C  M  P+    ++   +    P 
Sbjct: 4   SWILVAFFVIASVQAIPQRTKRQNCDCTPGEAPKCGCQVMPTPEIGGGQM---ICTCSPP 60

Query: 264 DVPQCFCDRPNVRNTKTGKCVPESEC**NCVN 359
             P+C C   NVRN  TG  +P      NCV+
Sbjct: 61  VPPKCVCTEGNVRNIITGPSLPALFKPYNCVS 92


>U42830-3|AAC48275.1|  195|Caenorhabditis elegans Hypothetical
           protein C53B7.2 protein.
          Length = 195

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 192 CPQMAEPDCENPEVHDFVDYVGPCDVPQCFCDRPNVRNTKTGKCVPESEC 341
           C QM  P CE+P     VD    C  P C C  P    + + +C+P + C
Sbjct: 38  CTQMCPPTCESPNPQCRVD----CTRPSCTC-LPGHVYSNSRQCIPANSC 82


>Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical
           protein R186.2a protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +1

Query: 166 RKVNIRFCIALKWPSRTVRIPKSTISLTTWAHATYHSASATGLMSGTRKLANVF 327
           R++N +FC +L    +TV I    ISLT   +  YH  ++ G + G + + ++F
Sbjct: 95  REMNTQFCFSLFMMWQTVSIAVG-ISLTYTLYFKYHKLNSKGPLFGWKLVRSLF 147


>Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical
           protein F53F1.11 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 396 LQTDTLILFTCIDLHNFINIQIPEHIC 316
           L+T+T +L   IDL NF+ +    HIC
Sbjct: 168 LETETGVLTGVIDLTNFVAVYAVAHIC 194


>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/68 (29%), Positives = 24/68 (35%)
 Frame = +3

Query: 138 GQHFPTRKCPKGEHSVLYCPQMAEPDCENPEVHDFVDYVGPCDVPQCFCDRPNVRNTKTG 317
           GQ  P   C         C    EP C NP           C    C C    VRN  T 
Sbjct: 32  GQRLP---CRGRNEEYKTCGTACEPSCTNPNPM----CTKQCINNVCQCRSGYVRNEITR 84

Query: 318 KCVPESEC 341
           +CV +++C
Sbjct: 85  QCVRQAQC 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,348,617
Number of Sequences: 27780
Number of extensions: 206844
Number of successful extensions: 540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)