Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N03
         (952 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   4.1  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        23   4.1  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   9.4  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -3

Query: 329 RNTFASFRVPDIRPVAEALWYVAWAHVVNEIVDF-GILT-VRLGHLRAIQNRMF 174
           +NT A  ++  +  +  +LW++AW   +  +++F GI   V++  L  I   +F
Sbjct: 268 QNTSAECKLAKVALMTISLWFMAWTPYL--VINFSGIFNLVKISPLFTIWGSLF 319


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -3

Query: 329 RNTFASFRVPDIRPVAEALWYVAWAHVVNEIVDF-GILT-VRLGHLRAIQNRMF 174
           +NT A  ++  +  +  +LW++AW   +  +++F GI   V++  L  I   +F
Sbjct: 18  QNTSAECKLAKVALMTISLWFMAWTPYL--VINFSGIFNLVKISPLFTIWGSLF 69


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +3

Query: 69  RTLTMXSFICICLFVVAAVGYVTGQHFPTRKCPK 170
           +T+ + S IC+C+  +      +G H     C K
Sbjct: 2   KTIVIISAICVCVSAMTLDELKSGLHTVQSVCMK 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,694
Number of Sequences: 438
Number of extensions: 2240
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)