Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N03
         (952 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38830.1 68415.m04771 tumor susceptibility protein-related co...    29   4.5  
At1g34150.1 68414.m04236 tRNA pseudouridine synthase family prot...    28   7.9  

>At2g38830.1 68415.m04771 tumor susceptibility protein-related
           contains weak similarity to Swiss-Prot:Q99816 tumor
           susceptibility gene 101 protein [Homo sapiens]
          Length = 331

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 148 FQRENARKVNIRFCI--ALKWPSRTVRIPKSTISLTTWAHATY 270
           F   N  KV + FC+  +L+  S T ++P  T+ LT W H  Y
Sbjct: 58  FNHNNGAKVQL-FCLEGSLRIRSSTTQLP--TVQLTIWIHENY 97


>At1g34150.1 68414.m04236 tRNA pseudouridine synthase family protein
           similar to pseudouridine synthase 3 [Mus musculus]
           GI:9652099; contains Pfam profile PF01416: tRNA
           pseudouridine synthase
          Length = 446

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 170 FRAFSRWKMLSGDVTDSCHNKQTNTNK 90
           F+A  R ++L GD  DSC+++   T+K
Sbjct: 121 FKALERTRLLVGDKKDSCYSRCGRTDK 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,544,899
Number of Sequences: 28952
Number of extensions: 181032
Number of successful extensions: 466
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2285480280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)