Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N02
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    29   0.92 
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    28   2.1  
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    28   2.1  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    27   2.8  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    27   4.9  

>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 175 AXGTRPQTTGTXWRQNQRRGQPKRKERNGGXAXGAGXGQ 59
           A  T+PQ  G  + QNQ + QP +    GG    +G  Q
Sbjct: 99  ASTTKPQAPGGLFNQNQTQAQPAQAAPTGGLFGLSGQNQ 137


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 134 AEPTQRTTKAKRKERXQXEXSGXGTGTXXAKXK 36
           AEP Q+  + +RK+R        GTG   AK K
Sbjct: 97  AEPIQKVARQQRKQRKNRGKKVFGTGKRLAKRK 129


>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 134 AEPTQRTTKAKRKERXQXEXSGXGTGTXXAKXK 36
           AEP Q+  + +RK+R        GTG   AK K
Sbjct: 97  AEPIQKVARQQRKQRKNRGKKVFGTGKRLAKRK 129


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 504 NSTVNFS*TFDSISSKQXCVLSASFLSKSLMKFVCSW 614
           NSTV+FS  FD +       L+ SFL   L   +C++
Sbjct: 545 NSTVSFSGIFDRVEKSVISELNFSFLFFLLWLLICAF 581


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 734 FEYAICVLSASFLTFSIT*KLT 669
           F    C++S SFLTF++  KLT
Sbjct: 488 FMLGTCIVSVSFLTFTVYAKLT 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,443
Number of Sequences: 5004
Number of extensions: 39034
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)