Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N02
         (913 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)                       29   3.9  
SB_13373| Best HMM Match : zf-CCHC (HMM E-Value=0.01)                  29   6.9  

>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2195

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = -2

Query: 360 VAVLCLDWRLCCTSTGXLSWNNPXAFRAVTVRVRLGRGTAARVRDQTDPGPXES--XCEA 187
           V +L  +   C    G   W+N       T  V  G GT  R+R+ T+P P  +   C+ 
Sbjct: 370 VEILACNTHFCPIHGGYTMWSN-----FTTCSVSCGNGTRTRIRNCTNPPPKHNGRTCDV 424

Query: 186 XXPQ 175
             P+
Sbjct: 425 LGPR 428


>SB_13373| Best HMM Match : zf-CCHC (HMM E-Value=0.01)
          Length = 206

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 160 PQTTGTXWRQNQRRGQPKRKER 95
           PQ +G+  RQ Q RG+P+R  R
Sbjct: 51  PQASGSNQRQQQARGKPQRSRR 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,262,051
Number of Sequences: 59808
Number of extensions: 323227
Number of successful extensions: 993
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)