Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N02
         (913 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    30   2.4  
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ...    29   4.3  
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ...    29   4.3  
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ...    29   4.3  
At4g18190.1 68417.m02703 purine permease family protein similar ...    29   5.7  

>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 181 AAAXGTRPQTTGTXWRQNQRRGQ-PKRKERNGG 86
           +AA G RPQT  T  R  QRRG+ P+  ER+ G
Sbjct: 279 SAATGRRPQTPETRPRTAQRRGRSPEFMERSPG 311


>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
           putative
          Length = 242

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -1

Query: 181 AAAXGTRP---QTTGTXWRQNQRRGQPKRKERNGGXAXGAGXGQERKXQXG 38
           AAA   RP    + G  WR  Q RG  +R    GG   G G G+ R+   G
Sbjct: 168 AAAPSGRPANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGGG-GRGRRPGKG 217


>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
           putative
          Length = 178

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -1

Query: 181 AAAXGTRP---QTTGTXWRQNQRRGQPKRKERNGGXAXGAGXGQERKXQXG 38
           AAA   RP    + G  WR  Q RG  +R    GG   G G G+ R+   G
Sbjct: 104 AAAPSGRPANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGGG-GRGRRPGKG 153


>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
           putative
          Length = 244

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -1

Query: 181 AAAXGTRP---QTTGTXWRQNQRRGQPKRKERNGGXAXGAGXGQERKXQXG 38
           AAA   RP    + G  WR  Q RG  +R    GG   G G G+ R+   G
Sbjct: 170 AAAPSGRPANGNSNGAPWRGGQGRGGQQRGGGRGGGGRGGG-GRGRRPGKG 219


>At4g18190.1 68417.m02703 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 358

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 209 GPGSVWSRTRAAVPRPSRTRTVTARKAXGLFQLN 310
           G  S W  T   +P PS+T+T+T +       L+
Sbjct: 48  GGKSTWLETLVQLPEPSKTKTITKKTTSSFLTLS 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,256,615
Number of Sequences: 28952
Number of extensions: 217804
Number of successful extensions: 454
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)