Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_N01
         (1014 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   2.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   2.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.8  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 682 LXPXRALXXPPPXXPAPXPXXRXRXPPPSXPTPXPXP 792
           L P R +  P P   +P    +    P + PTP P P
Sbjct: 71  LPPKREI--PSPKRSSPILAEKVSVSPTTPPTPSPPP 105



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/34 (29%), Positives = 10/34 (29%)
 Frame = +1

Query: 760 PPSXPTPXPXPPGXTRXPXXPXPPLXPPPPXXPP 861
           PP    P P              P  PP P  PP
Sbjct: 72  PPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPP 105


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
 Frame = +1

Query: 757 PPPSXPTPXPX--PPGX--TRXPXXPXPPLXPPPPXXPP 861
           P PS   P P   P G      P  P  P  P PP  PP
Sbjct: 153 PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = +1

Query: 712 PPXXPAPXPXXRXRXPPPSXPTPXPXPPGXTRXPXXPXPPLXPPPPXXP 858
           P   P P         PP+       PP   + P  P PP+ PP    P
Sbjct: 149 PKYEPNPSIIDPGPALPPTGFLCNNYPP-LPQVPPLPLPPIFPPTMINP 196


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 962  PXXTSPPXPXXXPHPP 1009
            P    PP P   PHPP
Sbjct: 226  PTGLIPPHPGLSPHPP 241



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 735 PXXPXPPPPXXSPHP 779
           P    PP P  SPHP
Sbjct: 226 PTGLIPPHPGLSPHP 240


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 962  PXXTSPPXPXXXPHPP 1009
            P    PP P   PHPP
Sbjct: 118  PTGLIPPHPGLSPHPP 133



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 735 PXXPXPPPPXXSPHP 779
           P    PP P  SPHP
Sbjct: 118 PTGLIPPHPGLSPHP 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,920
Number of Sequences: 336
Number of extensions: 3684
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 28764063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)