Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M24
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-7|CAB54355.1|  288|Caenorhabditis elegans Hypothetical ...    72   7e-13
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    31   1.5  

>AL110479-7|CAB54355.1|  288|Caenorhabditis elegans Hypothetical
           protein Y105C5B.9 protein.
          Length = 288

 Score = 71.7 bits (168), Expect = 7e-13
 Identities = 41/118 (34%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
 Frame = +3

Query: 309 FLXSXXXXXCFFEXGAXXADGXLTVXPXXSLNXVGXALXLLXPIFXCXXYXXRVXXXCXX 488
           FL S      FFE GA   DG LTV    +LN +G  L  L P F    +  ++      
Sbjct: 63  FLNSSDKIRFFFEEGAVDKDGELTVPKDKALNKIGHGLHFLDPTFEKMTFNSKIQNIFKE 122

Query: 489 LGFIXPAVVXXXYIFXXPGXGSEVVAXPXAXYLYXXPXPPV-GFWXALEXAPVXNGCL 659
           +G+  P VV   YIF  P  G  V     + +L   P   + G W A++ A V NGCL
Sbjct: 123 IGYQEPGVVQSMYIFKQPKIGGAVTDHVDSTFLRVDPIDHLTGVWIAIDEASVENGCL 180


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = -2

Query: 899 GERGGXGXXYQSXGWGXXXVQRXRGXSIXGAXGXXXGGXKXDGWINXGRG 750
           G +GG     Q  GWG    Q+  G       G   GG +  GW   GRG
Sbjct: 216 GSQGGSQGGSQG-GWGNQGGQQGGGRGGQQGPGGWGGGGRGGGWGGWGRG 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,582,718
Number of Sequences: 27780
Number of extensions: 84818
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)