Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M24
         (915 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01490.1 68415.m00072 phytanoyl-CoA dioxygenase (PhyH) family...    85   5e-17
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    29   4.3  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    28   7.5  

>At2g01490.1 68415.m00072 phytanoyl-CoA dioxygenase (PhyH) family
           protein contains Pfam profile PF05721: Phytanoyl-CoA
           dioxygenase (PhyH); weak similarity to Phytanoyl-CoA
           dioxygenase, peroxisomal precursor (EC 1.14.11.18)
           (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid
           oxidase) (Swiss-Prot:O14832) [Homo sapiens]
          Length = 283

 Score = 85.4 bits (202), Expect = 5e-17
 Identities = 53/166 (31%), Positives = 66/166 (39%)
 Frame = +3

Query: 270 FSTXXXXXLKXXXFLXSXXXXXCFFEXGAXXADGXLTVXPXXSLNXVGXALXLLXPIFXC 449
           FST          F  S      FFE  A   DG L      S+N VG AL  L P++  
Sbjct: 54  FSTKNQKHTTDNYFFESAEKISFFFEEKAFGDDGKLKQPKQLSINKVGHALHELDPLYKD 113

Query: 450 XXYXXRVXXXCXXLGFIXPAVVXXXYIFXXPGXGSEVVAXPXAXYLYXXPXPPVGFWXAL 629
             Y  +       LG+  P V+   YIF  PG G EVV      ++Y  P    G W AL
Sbjct: 114 FTYSSKFSSLASSLGYRRPVVMQSMYIFKQPGIGGEVVPHQDNSFVYTDPQSCTGLWIAL 173

Query: 630 EXAPVXNGCLWLXXXXXXXXVPXRLIRXPXXXRDEAXIYDTPAAVY 767
           E + + NGCLW         +  R IR      D    +D P+  Y
Sbjct: 174 EDSTLVNGCLWAIPGSHKNGLVRRFIRG-----DNGITFDQPSPSY 214


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 735 AXIYDTPAAVYPPIXLXPPXXXSXGTXYTXXPXPLYXXXPPP 860
           A +   P  VY P    PP        ++  P P+Y   PPP
Sbjct: 521 APVNSPPPPVYSPPPPPPPVHSPPPPVHSPPPPPVYSPPPPP 562


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
 Frame = +3

Query: 741 IYDTPAAVY----PPIXLXPPXXXSXGTXYTXXPXPLYXXXPPP 860
           ++  P  VY    PP+   PP   S        P P+Y   PPP
Sbjct: 577 VHSPPPPVYSPPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPP 620


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,269,892
Number of Sequences: 28952
Number of extensions: 89674
Number of successful extensions: 488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)