Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M23
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    33   0.072
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    31   0.29 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.67 
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.6  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    26   6.3  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   6.3  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
 Frame = +1

Query: 463 VNSEGXWVYEKDVLKITFPLKQ-KQPEDSKRPVAEPTETTPTNVSREEME-FTTESHV-R 633
           VNS G    E   +   F ++  ++ E+ K  +  P    P   S+EE E      ++ R
Sbjct: 323 VNSPGALSVEATYINQNFCVQALRETEEEKYKLPHPN---PFYNSKEESEPLAAHGYIYR 379

Query: 634 DVDVGLETAQKXNEIAKAVXATXYAVNIRDDAEFLPI 744
           DVD+ LET +K  ++        Y  N  +D +++ I
Sbjct: 380 DVDLSLETDEKPVKLMVRTEVDGYVKNPANDVQYISI 416


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 172 YDPFSPYVRESXLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRV 318
           Y+   P  ++S +   +L S L      LDD+ K L+L FP++I + RV
Sbjct: 153 YELPDPETKKSKIK--ALQSQLVRVNGELDDLQKHLTLSFPTLIAKSRV 199


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 23/65 (35%), Positives = 33/65 (50%)
 Frame = -2

Query: 731 SASSLMLTAYXVASTAFAISLXFWAVSKPTSTSRTWLSVVNSISSRLTFVGVVSVGSATG 552
           S+SS   TA   +S++  IS    + S PTSTS T  S  +S SS  +    +S  S++ 
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS 314

Query: 551 LLLSS 537
              SS
Sbjct: 315 SSFSS 319


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +1

Query: 199 ESXLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 378
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 379 VKAKN 393
            K  N
Sbjct: 163 SKKLN 167


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = -2

Query: 647 PTSTSRTWLSVVNSISSRLTFVGVVSVGSATGLLLSSG 534
           PT T R W   VN    R      V+      LLL+ G
Sbjct: 104 PTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARG 141


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 665 FWAVSKPTSTSRTWLSVVNSISSRLTFVGVVSVGSATGLLL 543
           +WA+   T      L++++S+    T    +SV +A GLLL
Sbjct: 89  WWAIRTITHLEIVGLNILSSLKYGSTLFSWISVANAFGLLL 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,538
Number of Sequences: 5004
Number of extensions: 54208
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)