Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M23
         (891 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       33   0.23 
SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)                   28   8.8  
SB_19502| Best HMM Match : UPF0181 (HMM E-Value=1.2)                   28   8.8  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 493 KDVLKITFPLKQKQPEDSKRPVAEPTETTPTNVSREEMEFTTE 621
           K   K   P ++++ E+ +RP  +PT+  PT + R   E  T+
Sbjct: 427 KKTTKPLLPEEEEEEEEEERPTPKPTKAKPTTIKRRPTEIPTK 469



 Score = 32.3 bits (70), Expect = 0.54
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 490 EKDVLKITFPL-KQKQPEDSKRPVAEPTETTPTNVSREEMEFTTESHVRDVDVGLETAQK 666
           E+   K T PL  + +PE+ +R    PT+  PT + R   E  T+   + +   +E+A++
Sbjct: 343 ERPTKKPTKPLLPEVEPEEEERATPRPTKAKPTTIKRRPTERPTKKPTKPLLPEVESAEE 402



 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 490 EKDVLKITFPL-KQKQPEDSKRPVAEPTETTPTNVSREEMEFTTE 621
           E+   K T PL  + +PE+ +R    PT+  PT + R   E  T+
Sbjct: 180 ERPTKKPTKPLLPEVEPEEEERATPRPTKAKPTTMKRRPTERPTK 224



 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 490 EKDVLKITFPL-KQKQPEDSKRPVAEPTETTPTNVSREEMEFTTE 621
           E+   K T PL  + +PE+ ++    PT+  PT + R   E  T+
Sbjct: 220 ERPTKKPTKPLLPEVEPEEEEKATPRPTKAKPTTIKRRPTERPTK 264


>SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)
          Length = 151

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 460 DVNSEGXWVYEKDVLKITFPLKQKQPEDSK--RPVAEPTE 573
           DVN +G  VY KD L+  F L  K  +DSK  RP  +PT+
Sbjct: 112 DVNGKGRIVY-KDFLR-HFVLAMKPQDDSKLIRPKLQPTK 149


>SB_19502| Best HMM Match : UPF0181 (HMM E-Value=1.2)
          Length = 423

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 298 CWGTSTTAPSSCRPSVAFRWQ 236
           CWGT  + PSS +PS+   W+
Sbjct: 193 CWGTRQS-PSSAKPSIRLMWK 212


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 535 PEDSKRPVAEPTETTP---TNVSREEMEFTTESHVRDV 639
           P  +  P  EP+ TTP   T  SR  +E TTE HV +V
Sbjct: 740 PRTTPEPTTEPSRTTPELTTEPSRTTVEPTTE-HVTNV 776


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,541,660
Number of Sequences: 59808
Number of extensions: 427603
Number of successful extensions: 1424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)