Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_M23
(891 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12200.1 68416.m01521 protein kinase family protein contains ... 33 0.34
At1g22060.1 68414.m02759 expressed protein 31 1.4
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi... 29 4.1
At3g47030.1 68416.m05107 F-box family protein contains F-box dom... 29 5.5
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 29 5.5
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 29 5.5
At5g55540.1 68418.m06919 expressed protein 28 7.2
At5g24740.1 68418.m02920 expressed protein 28 7.2
At4g34920.1 68417.m04951 1-phosphatidylinositol phosphodiesteras... 28 7.2
At5g12970.1 68418.m01487 C2 domain-containing protein contains I... 28 9.6
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 28 9.6
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 28 9.6
At1g53800.1 68414.m06123 expressed protein 28 9.6
>At3g12200.1 68416.m01521 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 571
Score = 32.7 bits (71), Expect = 0.34
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +1
Query: 496 DVLKITFPLKQKQPEDSKRP-VAEPTETTPT--NVSREEME--FTTESHVRDVDVGLETA 660
D LKI+ QK E P +A + TP N +E E F+ ES +RDVDVG+ +A
Sbjct: 369 DTLKISEFTSQKSDESLIDPDIAVYSTETPAEENALPKETENIFSEESQLRDVDVGVVSA 428
Query: 661 QK 666
Q+
Sbjct: 429 QE 430
>At1g22060.1 68414.m02759 expressed protein
Length = 1999
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 199 ESXLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINE 309
E LDT +S++ E++ + D +LSLKF + E
Sbjct: 1932 EEMLDTKGRYSSMETELREMHDRYSQLSLKFAEVEGE 1968
>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|P46825 Kinesin light chain
(KLC) {Loligo pealeii}; contains Pfam profile PF00515:
TPR Domain
Length = 1797
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +1
Query: 508 ITFPLKQKQPEDSKRPVAEPTETTPTNVSREEMEFTTESHVRDVDVGLETAQKXNEIAKA 687
+ FP E V EPT PT++ +E T E +DV V E N + A
Sbjct: 1671 VEFPPPHMITEPIAATVLEPTVILPTDIDTSGVEETKEG-TQDVAVADEVMDSVNHVNNA 1729
Query: 688 V 690
V
Sbjct: 1730 V 1730
>At3g47030.1 68416.m05107 F-box family protein contains F-box domain
Pfam:PF00646
Length = 414
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = -1
Query: 735 ELRIVSDVDSVRGRXYSFRDLIXLLGCLQADVNVPHVAL--GGELHLFTTYIR 583
ELR+++DVD V+ + +L L AD++V V + GE+ L T++IR
Sbjct: 305 ELRVLNDVDEVKWSQIIY-ELPNYWNNLPADIDVSIVGMTSAGEIVLATSHIR 356
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 28.7 bits (61), Expect = 5.5
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Frame = +1
Query: 496 DVLKITFPLKQKQPEDS--KRPVAEPTETTPTNV----SREEMEF-TTESHVRDVDVGLE 654
DV + +K+ E S K V EP+ TT TNV S EM T E+H + GL+
Sbjct: 1868 DVTDVARVMKEIFSETSLLKHKVGEPSATTRTNVPDAQSPGEMNLHTVETHKAEDSSGLK 1927
Query: 655 TAQKXNEIAKA 687
+ ++KA
Sbjct: 1928 NQEALYNLSKA 1938
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 28.7 bits (61), Expect = 5.5
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Frame = +1
Query: 496 DVLKITFPLKQKQPEDS--KRPVAEPTETTPTNV----SREEMEF-TTESHVRDVDVGLE 654
DV + +K+ E S K V EP+ TT TNV S EM T E+H + GL+
Sbjct: 1868 DVTDVARVMKEIFSETSLLKHKVGEPSATTRTNVPDAQSPGEMNLHTVETHKAEDSSGLK 1927
Query: 655 TAQKXNEIAKA 687
+ ++KA
Sbjct: 1928 NQEALYNLSKA 1938
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 259 DDMMKELSLKFPSIINEGRVEGDKYQISIH 348
D + SL PSI+ EGR + K+QI+ H
Sbjct: 866 DPSSPDSSLLVPSILEEGRGKTQKWQINTH 895
>At5g24740.1 68418.m02920 expressed protein
Length = 3306
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 466 NSEGXWVYEKDVLKITFPLKQKQPEDSKRPVAEPTETTPTNVSREEM 606
NS+G W + +D K + P K++ S +P+ + P+ E++
Sbjct: 3232 NSDGVWNWRQDQQKKSSPTKKRWNNPSAQPLLQTNLEFPSEEEAEDL 3278
>At4g34920.1 68417.m04951 1-phosphatidylinositol
phosphodiesterase-related contains weak similarity to
1-phosphatidylinositol phosphodiesterase precursor (EC
3.1.4.10) (Phosphatidylinositol-specific phospholipase
C) (PI-PLC). (Swiss-Prot:P34024) [Listeria
monocytogenes]
Length = 318
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 184 SPYVRESXLDTHSLWSNLANEMQHLDDMMKELSLKF 291
S Y++++ +DT W+ + ++HL + S KF
Sbjct: 209 SDYLKDNWIDTDLPWTKFQSNLKHLSEQQPTSSRKF 244
>At5g12970.1 68418.m01487 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 769
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 291 PQHYKRRTR-GRRQVSDIYSPAWLRTERHQRESEKWSADGA 410
PQ Y+ R GR+ ++ W+ T+ + S+ W +D A
Sbjct: 140 PQWYRLEDRHGRKVKGELMLAVWMGTQADEAFSDAWHSDAA 180
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 689 TAFAISLXFWAVSKPTSTSRTWLSVVNSISSRLTFVGVVSVGSA 558
++F L FW K T + +V+ +I + FVG+ + SA
Sbjct: 1168 SSFIFGLLFWNQGKKIDTQQNLFTVLGAIYGLVLFVGINNCTSA 1211
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana plumbaginifolia]
Length = 1426
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -2
Query: 686 AFAISLXFWAVSKPTSTSRTWLSVVNSISSRLTFVGVVSVGS 561
AF + FW + ++S+ ++V+ ++ S F+GV + S
Sbjct: 1182 AFILGTVFWDIGSKRTSSQDLITVMGALYSACLFLGVSNASS 1223
>At1g53800.1 68414.m06123 expressed protein
Length = 568
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 550 RPVAEPTETTPTNVSREEMEFTTESHVRDVDV 645
R AEP + TPT S + EF +S V+ V V
Sbjct: 295 RSDAEPRKKTPTKKSTRDSEFERQSQVQVVKV 326
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,530,321
Number of Sequences: 28952
Number of extensions: 290884
Number of successful extensions: 924
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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