Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M22
         (888 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55350.1 68416.m06147 expressed protein                             29   5.4  
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    28   7.2  
At1g16260.1 68414.m01947 protein kinase family protein contains ...    28   7.2  
At4g14905.2 68417.m02290 kelch repeat-containing F-box family pr...    28   9.5  
At4g14905.1 68417.m02289 kelch repeat-containing F-box family pr...    28   9.5  
At3g03090.1 68416.m00305 sugar transporter family protein simila...    28   9.5  

>At3g55350.1 68416.m06147 expressed protein
          Length = 406

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 134 TLKFLCLLVTXRSIRSPANFQGSVRHPPDIHDFVTWD-XEMGGGKVFGTLGE 286
           T  ++C LV       PANF  S  +P  ++D V      +G G+    +GE
Sbjct: 82  TFDYICSLVKADFTAKPANFSDSNGNPLSLNDRVAVALRRLGSGESLSVIGE 133


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 337 NDDRGKLTG--QAYGTRVLGPGGDSTXYGGR 423
           N+DRG   G    YG R  G GG  + YGGR
Sbjct: 52  NNDRGGYGGANSGYGGRGQGYGGRGSGYGGR 82


>At1g16260.1 68414.m01947 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 322 TGXFFNDDRGKLTGQAYGTRVLGPGGDSTXYGGRLD 429
           T  F ++D    T +   +R+LG GG  T Y G L+
Sbjct: 375 TKVFSSNDLENATDRFNASRILGQGGQGTVYKGMLE 410


>At4g14905.2 68417.m02290 kelch repeat-containing F-box family
           protein contains Pfam PF01344: Kelch motif (2 copies)
           and PF00646: F-box domain; similar to putative SKP1
           interacting partner 6 (GP:21689879) (SKIP6) {Arabidopsis
           thaliana}|19798784|gb|AU230074.1|AU230074
          Length = 372

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 91  IPRCCYPAALLVCVNAQ--VSMPPGYAEK 171
           +PRC YPA  LVC N +  ++ P  Y E+
Sbjct: 46  VPRCYYPAISLVCRNFRRLMASPEIYIER 74


>At4g14905.1 68417.m02289 kelch repeat-containing F-box family
           protein contains Pfam PF01344: Kelch motif (2 copies)
           and PF00646: F-box domain; similar to putative SKP1
           interacting partner 6 (GP:21689879) (SKIP6) {Arabidopsis
           thaliana}|19798784|gb|AU230074.1|AU230074
          Length = 372

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 91  IPRCCYPAALLVCVNAQ--VSMPPGYAEK 171
           +PRC YPA  LVC N +  ++ P  Y E+
Sbjct: 46  VPRCYYPAISLVCRNFRRLMASPEIYIER 74


>At3g03090.1 68416.m00305 sugar transporter family protein similar
           to xylose permease [Bacillus megaterium]  GI:1924928;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 503

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 548 ADK*VFLPRSHTPEADASIPALPPICLFKSIAALAF 441
           A+K   L  +H+PE  + + A+PP  LF ++ AL F
Sbjct: 27  AEKEPLLKENHSPENYSVLAAIPPF-LFPALGALLF 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,401,085
Number of Sequences: 28952
Number of extensions: 273443
Number of successful extensions: 595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)