Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M21
         (944 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage f...    33   2.0  
X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.               33   2.0  
BC005000-1|AAH05000.1|  478|Homo sapiens CPSF6 protein protein.        33   2.0  
BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.        33   2.0  
AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and polyadenyl...    33   2.0  

>X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage
           factor I 68 kDa subunit protein.
          Length = 551

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
 Frame = +3

Query: 711 PIPGFPXPXXSPXXXXGPFPXXTPXXXXXXGXFVFPPXSXXXLPRXPXPL-XXRXKXXPP 887
           P PG P P   P    GPFP   P           PP      P  P P         PP
Sbjct: 305 PPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPP 364

Query: 888 PXRXG 902
           P   G
Sbjct: 365 PTNSG 369


>X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.
          Length = 551

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
 Frame = +3

Query: 711 PIPGFPXPXXSPXXXXGPFPXXTPXXXXXXGXFVFPPXSXXXLPRXPXPL-XXRXKXXPP 887
           P PG P P   P    GPFP   P           PP      P  P P         PP
Sbjct: 305 PPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPP 364

Query: 888 PXRXG 902
           P   G
Sbjct: 365 PTNSG 369


>BC005000-1|AAH05000.1|  478|Homo sapiens CPSF6 protein protein.
          Length = 478

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
 Frame = +3

Query: 711 PIPGFPXPXXSPXXXXGPFPXXTPXXXXXXGXFVFPPXSXXXLPRXPXPL-XXRXKXXPP 887
           P PG P P   P    GPFP   P           PP      P  P P         PP
Sbjct: 232 PPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPP 291

Query: 888 PXRXG 902
           P   G
Sbjct: 292 PTNSG 296


>BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.
          Length = 588

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
 Frame = +3

Query: 711 PIPGFPXPXXSPXXXXGPFPXXTPXXXXXXGXFVFPPXSXXXLPRXPXPL-XXRXKXXPP 887
           P PG P P   P    GPFP   P           PP      P  P P         PP
Sbjct: 342 PPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPP 401

Query: 888 PXRXG 902
           P   G
Sbjct: 402 PTNSG 406


>AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and
           polyadenylation specific factor 6, 68 kD subunit variant
           protein.
          Length = 551

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
 Frame = +3

Query: 711 PIPGFPXPXXSPXXXXGPFPXXTPXXXXXXGXFVFPPXSXXXLPRXPXPL-XXRXKXXPP 887
           P PG P P   P    GPFP   P           PP      P  P P         PP
Sbjct: 305 PPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPP 364

Query: 888 PXRXG 902
           P   G
Sbjct: 365 PTNSG 369


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,790,973
Number of Sequences: 237096
Number of extensions: 917261
Number of successful extensions: 1005
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12436574528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)