Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M21
         (944 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27390.1 68415.m03306 proline-rich family protein contains pr...    29   3.4  

>At2g27390.1 68415.m03306 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 134

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
 Frame = +3

Query: 711 PIPGFPXPXXSPXXXXGPFPXXTPXXXXXXGXFVFPP--XSXXXLPRXPXPLXXRXKXXP 884
           P P  P    SP     PFP   P        F  PP       LPR P PL    +  P
Sbjct: 41  PPPSPPPSPSSPPRLPPPFPALFPPEPPLPPRFELPPPLFPPPPLPRLPPPLLPPPEEPP 100

Query: 885 --PP 890
             PP
Sbjct: 101 REPP 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,666,913
Number of Sequences: 28952
Number of extensions: 116755
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2266029384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)