Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M20
         (886 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...   108   2e-22
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...   101   2e-20
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    71   3e-11
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    68   3e-10
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    64   3e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    58   3e-07
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0...    54   6e-06
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4...    52   1e-05
UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2...    47   6e-04
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    44   0.004
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    43   0.012
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    40   0.064
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.084
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ...    37   0.59 
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur...    34   5.5  
UniRef50_UPI000155C1EA Cluster: PREDICTED: similar to glutamate-...    33   7.3  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score =  108 bits (260), Expect = 2e-22
 Identities = 49/56 (87%), Positives = 50/56 (89%)
 Frame = +3

Query: 555 TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRXCRLPDTCPPFSFGKRGAF 722
           TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFR CRLPDTCPPFS  +   F
Sbjct: 24  TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRF 79



 Score = 98.7 bits (235), Expect = 2e-19
 Identities = 59/117 (50%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
 Frame = +2

Query: 488 SKRPGTVKRPRCWRFSIGSAPLNEHHK---NRRSSQRWRNPTGL*RYQAFPPGSSLVRSP 658
           SK+  T    R  RFSIGSAPL    K     R  +  ++     R+    P  +L+  P
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61

Query: 659 VPXLPLTGYLSAFLLREAWRFLIXHAVXISXRCRSFAPXWAVCTNPPFXPTXXPYPV 829
              LP T     F LREAWRFLI HAV IS RCRSFAP WAVCTNPPF PT  PYPV
Sbjct: 62  C-RLPDT--CPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPV 115


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score =  101 bits (243), Expect = 2e-20
 Identities = 54/84 (64%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
 Frame = -1

Query: 829 YRIRXXGRXERGVRAHSPXWSERPTPX*DTYSVXYEKAPRFPK-EKGGQVSGKRQXRNRR 653
           YR     R ERGVRA+SP WSERP P  DT SV YEKAPRFPK +K  QVSGKRQ RNRR
Sbjct: 16  YRKGRSSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQVSGKRQGRNRR 75

Query: 652 AHEGASRGKRLVSL*SCRVSPPLT 581
           AHEGA+  K   SL      PPLT
Sbjct: 76  AHEGAAGEKSPASLSPVGFRPPLT 99


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 71.3 bits (167), Expect = 3e-11
 Identities = 32/36 (88%), Positives = 33/36 (91%)
 Frame = +3

Query: 555 TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLF 662
           TSITK DAQ+ GGETRQDYKDTRRFPL APSCALLF
Sbjct: 60  TSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLF 95


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 68.1 bits (159), Expect = 3e-10
 Identities = 32/42 (76%), Positives = 33/42 (78%)
 Frame = +3

Query: 555 TSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRXCRLP 680
           TSI K DAQ+ GGETRQDYKD RRFPL APSCALLF    LP
Sbjct: 92  TSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133



 Score = 59.3 bits (137), Expect = 1e-07
 Identities = 41/84 (48%), Positives = 46/84 (54%)
 Frame = +2

Query: 320 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 499
           R   +C  G +PLPRSLTR ARSFGCGERY+LT           G   E T  +  SK  
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT--------DGDGNFLEDT-RKTLSKEE 76

Query: 500 GTVKRPRCWRFSIGSAPLNEHHKN 571
               RPR  RFSIGSAPL    K+
Sbjct: 77  ---IRPRRSRFSIGSAPLTSIAKS 97


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 64.5 bits (150), Expect = 3e-09
 Identities = 30/38 (78%), Positives = 30/38 (78%)
 Frame = -1

Query: 496 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 383
           P    LLTCSF  YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 58.0 bits (134), Expect = 3e-07
 Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +2

Query: 296 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 463
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
           CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
           Citrobacter koseri ATCC BAA-895
          Length = 125

 Score = 53.6 bits (123), Expect = 6e-06
 Identities = 22/29 (75%), Positives = 22/29 (75%)
 Frame = +2

Query: 743 ISXRCRSFAPXWAVCTNPPFXPTXXPYPV 829
           IS RCRSFAP WAV  NPPF PT  PYPV
Sbjct: 77  ISARCRSFAPSWAVSKNPPFSPTAAPYPV 105



 Score = 43.6 bits (98), Expect = 0.007
 Identities = 26/42 (61%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 610 IKIPGVSPWKLPRALSCSXPAAYRIPV-RLSPSGSVALSHXS 732
           +KI  VS   LP ALSCS PA  RIPV   S +GSVALSH S
Sbjct: 32  LKIITVSDESLPLALSCSNPAVSRIPVPPFSLAGSVALSHSS 73


>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
           Bacteria|Rep: Putative uncharacterized protein 1 -
           Escherichia coli
          Length = 42

 Score = 52.4 bits (120), Expect = 1e-05
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = -1

Query: 829 YRIRXXGRXERGVRAHSPXWSERPTP 752
           YRIR  GR ERGVRAHSP WSERPTP
Sbjct: 16  YRIRRSGRAERGVRAHSPAWSERPTP 41


>UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2;
           cellular organisms|Rep: Putative uncharacterized protein
           1 - Escherichia coli
          Length = 47

 Score = 47.2 bits (107), Expect = 6e-04
 Identities = 21/30 (70%), Positives = 22/30 (73%)
 Frame = -1

Query: 829 YRIRXXGRXERGVRAHSPXWSERPTPX*DT 740
           YRIR   R ERGV A+SP WSERPTP  DT
Sbjct: 16  YRIRRSSRAERGVLAYSPAWSERPTPSRDT 45


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 415 HSKAVIRLSTESGDNAGKNM 474
           HSKAVIRLSTESGDNAGKNM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 42.7 bits (96), Expect = 0.012
 Identities = 22/41 (53%), Positives = 26/41 (63%)
 Frame = +3

Query: 222 INKLTTTIAFILCFRFRXXVWXVFSALMNRPTRGERRFAYW 344
           +++LT      L  RF      V +ALMNRPTRGERRFAYW
Sbjct: 1   MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 40.3 bits (90), Expect = 0.064
 Identities = 19/48 (39%), Positives = 30/48 (62%)
 Frame = +3

Query: 519 VAGVFXXXXXXXTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLF 662
           ++ +F       T+ITKI  Q +  +T+ +YK T  FPL++PS +LLF
Sbjct: 65  LSSLFPYNSPPLTTITKIYPQFKNTQTQHNYKYTTPFPLQSPSYSLLF 112


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.084
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -2

Query: 366 ERGSGRAPNTQTASPRALADSLMQ 295
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 37

 Score = 37.1 bits (82), Expect = 0.59
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +2

Query: 647 VRSPVPXLPLTGYLSAFL 700
           +RSPVP LPLTGYLSAFL
Sbjct: 1   MRSPVPTLPLTGYLSAFL 18



 Score = 35.9 bits (79), Expect = 1.4
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = +1

Query: 700 PSGSVALSHXSRCXYLXSV 756
           PSGSVALSH SRC YL SV
Sbjct: 19  PSGSVALSHSSRCRYLSSV 37


>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
           precursor; n=2; Polaromonas|Rep: Putative
           uncharacterized protein precursor - Polaromonas sp.
           (strain JS666 / ATCC BAA-500)
          Length = 268

 Score = 33.9 bits (74), Expect = 5.5
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -1

Query: 505 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 383
           G W  +G  L    L++    LI+W+  LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201


>UniRef50_UPI000155C1EA Cluster: PREDICTED: similar to
           glutamate-rich 1; n=1; Ornithorhynchus anatinus|Rep:
           PREDICTED: similar to glutamate-rich 1 - Ornithorhynchus
           anatinus
          Length = 450

 Score = 33.5 bits (73), Expect = 7.3
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 553 ERASQKSTLKSEVAKPDRTIKIPGVSPWKLPRALSCSXPAAYRIPVRLSPSGS 711
           ER  ++S L     +P R ++     PW +P + +   PAA +I    SP GS
Sbjct: 10  ERVMERSRLVDGSTQPARLLRDMSPIPWNVPISRNRKAPAAVKIQKMFSPLGS 62


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,996,863
Number of Sequences: 1657284
Number of extensions: 13167673
Number of successful extensions: 32302
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 30987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32287
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79522270534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)