Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M19
         (852 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                        97   1e-20
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                        97   1e-20
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        67   1e-11

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 48/114 (42%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
 Frame = -1

Query: 456 EYSDFNN--IEXXSYIXPSHXXKNNEFRLLDVDNXIILPXNXXIXIXITATXXXHSXTXP 283
           EYSD+ +  +E  SY+ P+      +FRLL+VDN +++P N  + + ITA    HS   P
Sbjct: 117 EYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVP 176

Query: 282 SLGXKXXXNPGXLNXTXXFIXRPGIFXGXCSEIXGAXXXXXPIXIEXXXIQNXI 121
           +L  K    PG LN T  FI RPG+F G CSEI GA     PI IE   +   I
Sbjct: 177 ALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAVSLDKYI 230



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 26/95 (27%), Positives = 37/95 (38%)
 Frame = -3

Query: 754 QNGAXPLIEQXIXFHDHTXXXXXXXXXXXXXXXXXVXFNKYXNRXLLEGXIIEXI*TIIP 575
           Q+ A P++E+ I FHD                       K   R L++G ++E I TIIP
Sbjct: 18  QDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTIIP 77

Query: 574 XFTXIFIXXXXXXXXXXXXXXXXXLITLKFIGHXW 470
               IFI                  +T+K +GH W
Sbjct: 78  AIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQW 112


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 48/114 (42%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
 Frame = -1

Query: 456 EYSDFNN--IEXXSYIXPSHXXKNNEFRLLDVDNXIILPXNXXIXIXITATXXXHSXTXP 283
           EYSD+ +  +E  SY+ P+      +FRLL+VDN +++P N  + + ITA    HS   P
Sbjct: 117 EYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVP 176

Query: 282 SLGXKXXXNPGXLNXTXXFIXRPGIFXGXCSEIXGAXXXXXPIXIEXXXIQNXI 121
           +L  K    PG LN T  FI RPG+F G CSEI GA     PI IE   +   I
Sbjct: 177 ALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAVSLDKYI 230



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 26/95 (27%), Positives = 37/95 (38%)
 Frame = -3

Query: 754 QNGAXPLIEQXIXFHDHTXXXXXXXXXXXXXXXXXVXFNKYXNRXLLEGXIIEXI*TIIP 575
           Q+ A P++E+ I FHD                       K   R L++G ++E I TIIP
Sbjct: 18  QDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTIIP 77

Query: 574 XFTXIFIXXXXXXXXXXXXXXXXXLITLKFIGHXW 470
               IFI                  +T+K +GH W
Sbjct: 78  AIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQW 112


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
 Frame = -1

Query: 456 EYSDFNN--IEXXSYIXPSHXXKNNEFRLLDVDNXIILPXNXXIXIXITATXXXHSXTXP 283
           EYSD+ +  +E  SY+ P+      +FRLL+VDN +++P N  + + ITA    HS   P
Sbjct: 117 EYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVP 176

Query: 282 SLGXKXXXNPGXLNXTXXFIXRPGIF 205
           +L  K    PG LN T  FI +   F
Sbjct: 177 ALAVKMDAVPGRLNQTGFFIKKTWSF 202



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 26/95 (27%), Positives = 37/95 (38%)
 Frame = -3

Query: 754 QNGAXPLIEQXIXFHDHTXXXXXXXXXXXXXXXXXVXFNKYXNRXLLEGXIIEXI*TIIP 575
           Q+ A P++E+ I FHD                       K   R L++G ++E I TIIP
Sbjct: 18  QDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTIIP 77

Query: 574 XFTXIFIXXXXXXXXXXXXXXXXXLITLKFIGHXW 470
               IFI                  +T+K +GH W
Sbjct: 78  AIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQW 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,314,221
Number of Sequences: 59808
Number of extensions: 59544
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)