Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_M18
(903 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 259 2e-69
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 259 2e-69
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 259 2e-69
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 258 4e-69
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 257 6e-69
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 48 6e-06
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 37 0.021
At4g30990.1 68417.m04398 expressed protein ; expression supporte... 29 3.2
At4g26330.1 68417.m03786 subtilase family protein contains simil... 29 4.2
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 29 5.6
At4g14280.1 68417.m02201 hypothetical protein 28 9.7
At3g55160.1 68416.m06126 expressed protein 28 9.7
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 259 bits (634), Expect = 2e-69
Identities = 123/163 (75%), Positives = 139/163 (85%)
Frame = +1
Query: 154 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 333
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 334 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 513
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 514 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 642
FYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 259 bits (634), Expect = 2e-69
Identities = 123/163 (75%), Positives = 139/163 (85%)
Frame = +1
Query: 154 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 333
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 334 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 513
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 514 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 642
FYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 259 bits (634), Expect = 2e-69
Identities = 123/163 (75%), Positives = 139/163 (85%)
Frame = +1
Query: 154 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 333
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 334 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 513
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 514 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 642
FYVVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 171
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 258 bits (632), Expect = 4e-69
Identities = 122/161 (75%), Positives = 138/161 (85%)
Frame = +1
Query: 160 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 339
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 340 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 519
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 520 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 642
VVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 121 VVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEG 161
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 257 bits (630), Expect = 6e-69
Identities = 122/161 (75%), Positives = 138/161 (85%)
Frame = +1
Query: 160 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 339
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 340 CTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFY 519
TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 520 VVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQKYDG 642
VVL RPG+ VA RRR +VG HR+TK+DAMKWFQ KY+G
Sbjct: 121 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEG 161
>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
contains Pfam profiles PF00673: ribosomal L5P family
C-terminus, PF00281: ribosomal protein L5
Length = 262
Score = 48.4 bits (110), Expect = 6e-06
Identities = 30/130 (23%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Frame = +1
Query: 154 NVMRNLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 324
N+ + ++K+ +N +G++ L A K + +TGQ+P+ ++AR ++ +F IR ++
Sbjct: 79 NIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQ 138
Query: 325 KIAVHCTVRGAKAEEILERGL-----KVREYE-LRRDNFSATGNFGFGIQEH-IDLGIKY 483
+ + T+RG L+R + + R+++ + +F GN+ G+++ + I++
Sbjct: 139 PLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSPSSFDGNGNYSIGVKDQGVFPEIRF 198
Query: 484 DPSIGIYGLD 513
D G+D
Sbjct: 199 DAVGKTRGMD 208
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 36.7 bits (81), Expect = 0.021
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 367 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 531
E+LE+GLK EY + S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At4g30990.1 68417.m04398 expressed protein ; expression supported
by MPSS
Length = 2138
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = -1
Query: 339 MDSNLFIT-TDTKRPHCIPSLGKYRLLSCELLQHLGGTS----QPVTGFTNTDVQAKLSD 175
+DS+L I T R H S GKY+L+ L L GT+ +TG ++D++ LS
Sbjct: 465 VDSSLLICFKKTLRQHLAVSDGKYQLMIHSFLHSLLGTTLRSCYKMTGINHSDLEEALSF 524
Query: 174 MK 169
K
Sbjct: 525 AK 526
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -2
Query: 443 PKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRTVYLA 282
P++ V K + +SY +TFKP S + WT L R+ V+L+
Sbjct: 687 PRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWTN--GLHRVRSPVVVFLS 738
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 364 EEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFYVVL 528
E+ +E L+ RE L+ D F+ G GF G + +DLG + + GL V L
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFL 185
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 461 TLTWVSSTIPQLEFMDWTFTS 523
T TW SS +P L + W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187
>At3g55160.1 68416.m06126 expressed protein
Length = 2149
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +2
Query: 245 WSNSQDNS----LYFPR--LGIQCGLLVSVVMKRLLSIVQSEELKQKKSLRGV*KSENMN 406
W ++NS L+FP GI +V +++ +V S +++ + + EN++
Sbjct: 833 WDRLRENSFRILLHFPTPFTGISSEDMVQIIIPWAKQLVCSPRVRESDA-----ECENID 887
Query: 407 CGVTTSPPRVILASVFKNTLTWVSSTIPQLE 499
C S P+ + K+ + W+ +++ + E
Sbjct: 888 CRNQNSKPKYPVVEYIKSLIQWLDASVTEGE 918
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,630,211
Number of Sequences: 28952
Number of extensions: 307239
Number of successful extensions: 806
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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