Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M16
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   6.3  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   8.4  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   8.4  

>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 772 IGHNIVLG*RAADSLTPVN--HYQXVVSNRDAVVFPEDRV 659
           IG  IVL    A + TP+   HY  V + R+ V+ PEDR+
Sbjct: 374 IGIGIVL----AGACTPIIYVHYNRVYTRRNGVMSPEDRL 409


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 158  VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 292
            + TK  + + D K+K       +++ L P+    I  IAK+YN E
Sbjct: 1174 IMTKSVIEHTDKKVK----FWFIENFLSPSFKSSIPAIAKKYNFE 1214


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
 Frame = +2

Query: 170 EPMVNLDMKMKE-LCIMKLLDHILQPTMFEDIKEIAKEY-NIEKSCDKYMN-----VDVV 328
           +P+ +L +++KE L  +K L    Q    E I +   ++ N+ K   K +      +D+V
Sbjct: 298 QPLYDLTIQLKEELQSLKRLSSEQQNLQHEQILQWKSDFLNVSKDHLKVLQQLRPLIDIV 357

Query: 329 KQFMEMYKMGM 361
           ++FM +Y  G+
Sbjct: 358 EKFMNVYFKGL 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,760
Number of Sequences: 5004
Number of extensions: 56831
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)