Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M15
         (1064 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = +3

Query: 876 PXPXPPPXLPXRXLPXAFPXAPAXXPPXXXLPXPPP 983
           P P P P    +      P  P+  PP    P  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 2.0
 Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
 Frame = +2

Query: 917  PXRLPXXP-RSXPPXPXPXPXPXQXXPXPPPXXP 1015
            P + P  P R  PP P   P P      PP   P
Sbjct: 27   PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
 Frame = +2

Query: 938  PRSXPPXPXPXP-----XPXQXXPXPPPXXPPPLXP 1030
            P S  P P P P      P +  P  P   PPP  P
Sbjct: 16   PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 23.0 bits (47), Expect = 4.6
 Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
 Frame = +1

Query: 898 PSXXAPSPXPSXXPPLXXPP--SXPXPXPXPXP 990
           PS  AP P PS       P   S P P   P P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 22.2 bits (45), Expect = 8.1
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = +1

Query: 964  PXPXPXPXPSRXXXXXXXXXXPPRXPXPPXPP 1059
            P P P P  S           P + P P  PP
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 94  VFVCHNGXN 120
           VFVCHNG N
Sbjct: 805 VFVCHNGMN 813


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,783
Number of Sequences: 438
Number of extensions: 4719
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35547795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)