Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M14
         (878 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    30   1.8  
At2g38440.1 68415.m04721 expressed protein                             29   3.1  
At5g45350.1 68418.m05567 proline-rich family protein contains pr...    28   9.5  
At2g01460.1 68415.m00069 phosphoribulokinase/uridine kinase fami...    28   9.5  
At1g12130.1 68414.m01405 flavin-containing monooxygenase family ...    28   9.5  

>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = +1

Query: 169 YQYQPGPYPKTPEXRAAAAKKYGMXVXEYTPYPEXM-GYGDYPKLPDIGEDSKDPHYP-- 339
           + Y   PY + P       + Y      + P P  +  +  YP   +    S  PHYP  
Sbjct: 258 HPYSHQPYHQDPPKHMPPPQNYS----SHEPSPNSLPNFQSYPSFSESSLPSTSPHYPSH 313

Query: 340 YDNPE 354
           Y NPE
Sbjct: 314 YQNPE 318


>At2g38440.1 68415.m04721 expressed protein 
          Length = 1399

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 343  HKDNEDPWSPHQYQVASDNHHSPXLQDREYTPLQ 242
            H+D +D    H+ Q +SD+HH P  + +  TP Q
Sbjct: 1204 HEDFKDDADVHESQSSSDDHHCP--ETKSLTPTQ 1235


>At5g45350.1 68418.m05567 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 177

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = +1

Query: 175 YQPGPYPKTPEXRAAAAKKYGMXVXEYTPYPEXMGYGDYPKLPDIG 312
           Y PG YP  P     A          Y  YP   GYG YP  P  G
Sbjct: 49  YPPGAYPPAPGGYPPAPG--------YGGYPPAPGYGGYPPAPGHG 86


>At2g01460.1 68415.m00069 phosphoribulokinase/uridine kinase family
           protein contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 723

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
 Frame = -3

Query: 432 PYANVTAI--STKYFCSSVQRFIEI 364
           PY ++ +I  STK FCSSVQ FI+I
Sbjct: 649 PYQDILSILDSTK-FCSSVQNFIDI 672


>At1g12130.1 68414.m01405 flavin-containing monooxygenase family
           protein / FMO family protein contains similarity to
           flavin-containing monooxygenase 2 (FMO2) from Homo
           sapiens [GI:1834493]; contains Pfam profile PF00743
           Flavin-binding monooxygenase-like
          Length = 470

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 268 EXMGYGDYPKLPDIGEDSKDPHYPYDNPELKR 363
           E MGY D+P +    ++S+DP    D+ E+ R
Sbjct: 84  ECMGYSDFPFVTRPDDESRDPRRYPDHREVMR 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,202,805
Number of Sequences: 28952
Number of extensions: 247730
Number of successful extensions: 596
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)