Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M13
         (878 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)                  30   2.8  
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_32093| Best HMM Match : MCM (HMM E-Value=0.004)                     30   2.8  
SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26)                 29   3.7  
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)                      29   5.0  
SB_26475| Best HMM Match : Cadherin (HMM E-Value=0.009)                29   5.0  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   6.6  
SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_7159| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.7  

>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
          Length = 1063

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 796 GGVXPG*EXXGGXEXGGGGGXXXGAGKG 713
           GG   G +  GG + GGGGG   G G G
Sbjct: 771 GGGGDGGDGGGGGDGGGGGGGGGGGGGG 798



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 808 WGXEGGVXPG*EXXGGXEXGGGGGXXXGAGKG 713
           +G  GG   G    GG   GGGGG   G G G
Sbjct: 836 FGDGGGYADGDGGGGGGGGGGGGGGGGGGGGG 867



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 805 GXEGGVXPG*EXXGGXEXGGGGGXXXGAGKGE 710
           G +GG     +  GG   GGGGG   G G G+
Sbjct: 801 GGDGGGYGDGDGGGGGGGGGGGGGGDGGGYGD 832


>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -2

Query: 805 GXEGGVXPG*EXXGGXEXGGGGGXXXGAGKGEXR 704
           G  GG   G E  GG   G GGG   G G G  R
Sbjct: 166 GGNGGGRGGGEGGGGRGRGTGGGSRGGGGDGRGR 199



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -2

Query: 805 GXEGGVXPG*EXXGGXEXGGGGGXXXGAGKGEXR 704
           G EGG   G    GG   GGG G   G G  E R
Sbjct: 174 GGEGGGGRGRGTGGGSRGGGGDGRGRGRGGTEER 207


>SB_32093| Best HMM Match : MCM (HMM E-Value=0.004)
          Length = 348

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 805 GXEGGVXPG*EXXGGXEXGGGGGXXXGAGKG 713
           G +GG   G    GG   GGGGG   G G G
Sbjct: 79  GCDGGGGDGDGGGGGDGDGGGGGDGGGGGDG 109



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 796 GGVXPG*EXXGGXEXGGGGGXXXGAGKGE 710
           GG   G +  GG   GGGGG   G G G+
Sbjct: 74  GGDGGGCDGGGGDGDGGGGGDGDGGGGGD 102


>SB_58158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 805 GXEGGVXPG*EXXGGXEXGGGGGXXXGAGKG 713
           G +GG   G    GG   GGGGG   G G G
Sbjct: 94  GCDGGGGDGDGGGGGDGDGGGGGDGGGGGDG 124



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 796 GGVXPG*EXXGGXEXGGGGGXXXGAGKGE 710
           GG   G +  GG   GGGGG   G G G+
Sbjct: 89  GGDGGGCDGGGGDGDGGGGGDGDGGGGGD 117


>SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26)
          Length = 765

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = -2

Query: 805 GXEGGVXPG*EXXGGXEXGGGGGXXXGAGKG 713
           G  GG   G    GG   GGGGG   GAG G
Sbjct: 678 GGGGGGGGGGGGGGGGGGGGGGGGAGGAGAG 708



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 805 GXEGGVXPG*EXXGGXEXGGGGGXXXGAGKG 713
           G +GG   G    GG   GGGGG   G G G
Sbjct: 659 GGDGGGGGGGGGGGGGGGGGGGGGGGGGGGG 689


>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
          Length = 595

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = -2

Query: 766 GGXEXGGGGGXXXGAGKGEXR*XXRXSKXQCKXQDXQXEIGXXVXXE*KV-XRIVXTQXA 590
           GG   GGGGG     G+G  R     +  +C  Q  Q   G  V     V  R V  Q  
Sbjct: 517 GGGGGGGGGGGGGRGGRGRGRPTTTTTTRRCVTQKTQRADGTHVTRSNCVATRRVNNQVG 576

Query: 589 NGG 581
            GG
Sbjct: 577 AGG 579


>SB_26475| Best HMM Match : Cadherin (HMM E-Value=0.009)
          Length = 340

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 675 HXYLLXRXXYLXSPXPAPXXXPPPPP 752
           H  L  R  Y   P P P   PPPPP
Sbjct: 151 HLGLRCRSYYSPPPQPPPPPLPPPPP 176


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 805 GXEGGVXPG*EXXGGXEXGGGGGXXXGAGKGE 710
           G  GG   G    GG   GGGGG   G G G+
Sbjct: 138 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGDGD 169



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 805 GXEGGVXPG*EXXGGXEXGGGGGXXXGAGKGE 710
           G  GG   G    GG   GGGGG   G G G+
Sbjct: 136 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGD 167


>SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = -2

Query: 796 GGVXPG*EXXGGXEXGGGGGXXXGAGKG 713
           GGV  G    GG   GGGGG   GAG G
Sbjct: 28  GGVGVG---VGGGGVGGGGGNGGGAGNG 52


>SB_7159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 805 GXEGGVXPG*EXXGGXEXGGGGGXXXGAGKGE 710
           G +GG   G    GG    GGGG   G G+G+
Sbjct: 14  GGDGGDSGGGSDGGGDGGDGGGGSDGGDGEGD 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,911,698
Number of Sequences: 59808
Number of extensions: 90711
Number of successful extensions: 1043
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)