Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M13
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U50310-5|AAA92541.1|  318|Caenorhabditis elegans Ground-like (gr...    28   7.7  
AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like ...    28   7.7  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    28   7.7  

>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 808 WGXEGGVXPG*EXXGGXEXGGGGGXXXGAGKG 713
           WG  GG   G    GG   GGGG    G G+G
Sbjct: 81  WGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRG 112



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -2

Query: 805 GXEGGVXPG*EXXGGXEXGGGGGXXXGAGKGEXR 704
           G  GG   G    GG   GGGGG   G G G  R
Sbjct: 88  GNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGR 121



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -2

Query: 805 GXEGGVXPG*EXXGGXEXGGGGGXXXGAGKG 713
           G  GG   G    GG   GGGGG   G G G
Sbjct: 87  GGNGGGGRGGGGGGGGGRGGGGGGRGGGGGG 117


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -2

Query: 796 GGVXPG*EXXGGXEXGGGGGXXXGAGKG 713
           GG   G    GG   GGGGG   G G G
Sbjct: 252 GGYSSGGSSGGGYSTGGGGGYAGGGGGG 279


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -2

Query: 796 GGVXPG*EXXGGXEXGGGGGXXXGAGKG 713
           GG   G    GG   GGGGG   G G G
Sbjct: 252 GGYSSGGSSGGGYSTGGGGGYAGGGGGG 279


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -2

Query: 805 GXEGGVXPG*EXXGGXEXGGGGGXXXGAGKG 713
           G  GG   G    GG   GGGGG   G G G
Sbjct: 124 GGGGGCGGGCGGGGGGGCGGGGGGGCGGGGG 154


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 878 GWGEXXRVXXGXGGEGXEXLXGXXGXGGWGG 786
           GWG       G GG G     G  G GGWGG
Sbjct: 147 GWGGSQGGQNGGGGRG-----GSGGQGGWGG 172


>U50310-5|AAA92541.1|  318|Caenorhabditis elegans Ground-like (grd
           related) protein 9 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 702 YLXSPXPAPXXXPPPPP 752
           Y+ +P P P   PPPPP
Sbjct: 130 YIEAPPPPPSPPPPPPP 146


>AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like
           (grd related) protein29 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -2

Query: 805 GXEGGVXPG*EXXGGXEXGGGGGXXXGAGKG 713
           G  GG   G    GG   GGGGG   G G G
Sbjct: 32  GGGGGCGGGGGCGGGCGYGGGGGCGYGGGYG 62


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 766 GGXEXGGGGGXXXGAGKGEXR 704
           GG   GGGGG   GAG G  R
Sbjct: 411 GGGGAGGGGGYAGGAGAGSYR 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,375,496
Number of Sequences: 27780
Number of extensions: 70686
Number of successful extensions: 1053
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)