Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M10
         (896 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    45   0.003
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    34   5.7  
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    33   9.9  
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    33   9.9  

>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 44.8 bits (101), Expect = 0.003
 Identities = 23/37 (62%), Positives = 24/37 (64%)
 Frame = +1

Query: 658 LCFRFRGXCXXVFSALMNRPXPGXRRFAYWXLFRFLA 768
           L  RF      V +ALMNRP  G RRFAYW LFRFLA
Sbjct: 12  LTARFPVGKPVVPAALMNRPTRGERRFAYWALFRFLA 48


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = -2

Query: 751 APNTQTAXPRGXADSLMQ 698
           APNTQTA PR  ADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 18/35 (51%), Positives = 19/35 (54%)
 Frame = +3

Query: 699 CINESAXPRGXAVCVLGALPXPRSXTXXARSFGXG 803
           CI + A  R  AV VL ALP  RS T   RS G G
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 735 VCVLGALPXPRSXTXXARSFGXGXR 809
           +C  G +P PRS T  ARSFG G R
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGER 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 508,952,808
Number of Sequences: 1657284
Number of extensions: 6649796
Number of successful extensions: 10322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10317
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81161904978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)