Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M09
         (1021 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.2  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   5.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   6.6  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   8.7  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 838 PPPPPPP 858
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 150 TRCGLVHELRKHGFEENLMRNWVCLVEHESSRDTS 254
           TR  L H    H      +  W+ +V  ES  DTS
Sbjct: 248 TRLFLTHRKPFHPASTQSLSRWIKMVLAESGVDTS 282


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 940 LALSPXPPPXPXDPPXPXXT 999
           +++SP  PP P  PP    T
Sbjct: 91  VSVSPTTPPTPSPPPEERLT 110


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 229 STRHTQFLMRFSSKPCFLSSCTRPHLVNVLASEPTQ 122
           S   T  L R   +  +LS+  R HL +++   PTQ
Sbjct: 48  SKAQTYELERRFRQQRYLSAPEREHLASIIRLTPTQ 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,931
Number of Sequences: 336
Number of extensions: 2090
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 28970257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)