Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M09
         (1021 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   0.061
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   0.14 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.60 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   0.85 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   1.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.4  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   1.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    23   2.7  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   9.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect(2) = 0.061
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 829 PXXPPPPPPP 858
           P  PPPPPPP
Sbjct: 6   PGNPPPPPPP 15



 Score = 25.8 bits (54), Expect(2) = 0.061
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 838 PPPPPPPXXSP 870
           PPPPPPP   P
Sbjct: 10  PPPPPPPGFEP 20



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 829 PXXPPPPPPP 858
           P  PPPPPPP
Sbjct: 21  PSQPPPPPPP 30



 Score = 22.2 bits (45), Expect(2) = 8.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 829 PXXPPPPPPP 858
           P   PPPPPP
Sbjct: 5   PPGNPPPPPP 14



 Score = 21.8 bits (44), Expect(2) = 8.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 838 PPPPPPPXXSP 870
           PPPPPP    P
Sbjct: 11  PPPPPPGFEPP 21


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect(2) = 0.14
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 829 PXXPPPPPPP 858
           P  PPPPPPP
Sbjct: 942 PAFPPPPPPP 951



 Score = 24.6 bits (51), Expect(2) = 0.14
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 838 PPPPPPPXXS 867
           PPPPPPP  S
Sbjct: 947 PPPPPPPLVS 956


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 25/73 (34%), Positives = 25/73 (34%)
 Frame = -3

Query: 983 GGSXGXGGGXGERAXXXGXGXXXXXXXXXXXXXXXGXXGEXXGGGGGGGXXGXXXXVXGH 804
           GG  G GGG G      G G               G  G   GGG GG   G      G 
Sbjct: 188 GGFGGFGGGSG--GPPPGPGGFGGFGGFGGEGHHHGGHG-GFGGGPGGFEGGPGGFGGGP 244

Query: 803 GEGGXGSXGXGGG 765
           G  G G  G GGG
Sbjct: 245 GGFGGGLGGFGGG 257



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 22/70 (31%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
 Frame = -3

Query: 989 GXGGSXGXGGGXGERAXXXGXGXXXXXXXXXXXXXXXGXXGEXXGGGG----GGGXXGXX 822
           G GG  G GG  GE     G G                  G    GGG    GGG  G  
Sbjct: 203 GPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFG 262

Query: 821 XXVXGHGEGG 792
               GHG  G
Sbjct: 263 GGPGGHGGPG 272


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
 Frame = +1

Query: 838 PPPPPP----PXXSPXXXXXXXXXXXXXXXXXXXXPXXLALSPXPPPXPXDP 981
           PPPPPP    P  +P                    P  +A +  PPP P  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 24.6 bits (51), Expect(2) = 0.85
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 838 PPPPPPPXXS 867
           PPPPPPP  S
Sbjct: 777 PPPPPPPAVS 786



 Score = 23.0 bits (47), Expect(2) = 0.85
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 829 PXXPPPPPP 855
           P  PPPPPP
Sbjct: 775 PPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 3.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 838 PPPPPPP 858
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.8 bits (49), Expect(2) = 1.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 838 PPPPPPP 858
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 23.4 bits (48), Expect(2) = 1.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 841 PPPPPPXXSP 870
           PPPPPP  +P
Sbjct: 361 PPPPPPRSAP 370



 Score = 21.8 bits (44), Expect(2) = 3.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 841 PPPPPPXXS 867
           PPPPPP  S
Sbjct: 337 PPPPPPPRS 345


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/51 (29%), Positives = 16/51 (31%)
 Frame = +1

Query: 838 PPPPPPPXXSPXXXXXXXXXXXXXXXXXXXXPXXLALSPXPPPXPXDPPXP 990
           PPPPPPP   P                       +   P PP  P  PP P
Sbjct: 238 PPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNI---PPPPATPSQPPRP 285


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 1002 GGXXGXGGVXGXGGWXGGEG 943
            GG  G GG  G GG+ GG G
Sbjct: 454  GGFGGRGGFGGRGGFGGGRG 473


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.4 bits (48), Expect(2) = 2.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 841 PPPPPPXXSP 870
           PPPPPP  +P
Sbjct: 5   PPPPPPAPAP 14



 Score = 22.6 bits (46), Expect(2) = 2.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 829 PXXPPPPPPP 858
           P  PPPPP P
Sbjct: 3   PAPPPPPPAP 12


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = -3

Query: 869 GEXXGGGGGGGXXGXXXXVXGHGEGGXGSXGXGGG 765
           G   GG  GGG  G      G G    G  G  GG
Sbjct: 29  GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,987
Number of Sequences: 5004
Number of extensions: 29482
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 531251476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)